Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003240A_C01 KMC003240A_c01
(416 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181742.1| putative DNA polymerase delta small subunit; pr... 55 2e-07
gb|AAM97084.1| putative DNA polymerase delta small subunit [Arab... 55 2e-07
sp|Q9LRE5|DPD2_ORYSA DNA polymerase delta small subunit gi|91885... 52 2e-06
emb|CAD10079.1| SI:dZ150F13.3 (novel protein similar to human DN... 36 0.13
gb|AAH45410.1| Similar to polymerase (DNA directed), delta 2, re... 36 0.13
>ref|NP_181742.1| putative DNA polymerase delta small subunit; protein id:
At2g42120.1 [Arabidopsis thaliana]
gi|13431449|sp|O48520|DPD2_ARATH DNA polymerase delta
small subunit gi|7434811|pir||T00922 pobable
DNA-directed DNA polymerase delta regulatory chain
T24P15.3 - Arabidopsis thaliana
gi|2673906|gb|AAB88640.1| putative DNA polymerase delta
small subunit [Arabidopsis thaliana]
Length = 456
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -3
Query: 414 LICVPKFSETGVAVMLNLRDLECHALSFGTQFS 316
LIC+PKF ETG+AV +NLR+LECH LSF TQ +
Sbjct: 422 LICIPKFCETGIAVAVNLRNLECHTLSFSTQIN 454
>gb|AAM97084.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana]
Length = 440
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -3
Query: 414 LICVPKFSETGVAVMLNLRDLECHALSFGTQFS 316
LIC+PKF ETG+AV +NLR+LECH LSF TQ +
Sbjct: 406 LICIPKFCETGIAVAVNLRNLECHTLSFSTQIN 438
>sp|Q9LRE5|DPD2_ORYSA DNA polymerase delta small subunit gi|9188572|dbj|BAA99574.1| OsPol
delta small subunit [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 52.0 bits (123), Expect = 2e-06
Identities = 22/34 (64%), Positives = 28/34 (81%)
Frame = -3
Query: 414 LICVPKFSETGVAVMLNLRDLECHALSFGTQFSS 313
LIC+P+F ++GVAVMLNLR+LEC LSF T F +
Sbjct: 396 LICIPRFCDSGVAVMLNLRNLECSTLSFSTSFDA 429
>emb|CAD10079.1| SI:dZ150F13.3 (novel protein similar to human DNA directed
polymerase delta 2, regulatory subunit (50kD) (POLD2))
[Danio rerio]
Length = 467
Score = 35.8 bits (81), Expect = 0.13
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -3
Query: 414 LICVPKFSETGVAVMLNLRDLECHALSFGT 325
L+ +P+FS T A ++NLR LEC +SF +
Sbjct: 423 LVAIPEFSSTQTACLVNLRTLECEPISFSS 452
>gb|AAH45410.1| Similar to polymerase (DNA directed), delta 2, regulatory subunit
(50 kDa) [Danio rerio]
Length = 467
Score = 35.8 bits (81), Expect = 0.13
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -3
Query: 414 LICVPKFSETGVAVMLNLRDLECHALSFGT 325
L+ +P+FS T A ++NLR LEC +SF +
Sbjct: 423 LVAIPEFSSTQTACLVNLRTLECEPISFSS 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,395,086
Number of Sequences: 1393205
Number of extensions: 5400416
Number of successful extensions: 10059
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10059
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
