Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003239A_C01 KMC003239A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64662.1| unknown [Arabidopsis thaliana] 77 2e-13
ref|NP_565184.1| expressed protein; protein id: At1g78620.1, sup... 77 2e-13
dbj|BAB21160.1| P0456A01.17 [Oryza sativa (japonica cultivar-gro... 51 1e-05
ref|NP_485652.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 43 0.003
ref|ZP_00074885.1| hypothetical protein [Trichodesmium erythraeu... 42 0.006
>gb|AAM64662.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 77.0 bits (188), Expect = 2e-13
Identities = 35/45 (77%), Positives = 41/45 (90%)
Frame = -2
Query: 583 EANICVLASQIANLGESIIGAALQEKEGFQWLNNDAVNIINVSHG 449
EA +CVLASQIANLGESIIGA+ Q+KEGF+WLNND VN+IN+S G
Sbjct: 272 EAAVCVLASQIANLGESIIGASFQDKEGFKWLNNDVVNVINISLG 316
>ref|NP_565184.1| expressed protein; protein id: At1g78620.1, supported by cDNA:
3173., supported by cDNA: gi_14334657, supported by
cDNA: gi_17104590 [Arabidopsis thaliana]
gi|25406560|pir||H96814 hypothetical protein T30F21.5
[imported] - Arabidopsis thaliana
gi|4836871|gb|AAD30574.1|AC007260_5 Unknown protein
[Arabidopsis thaliana] gi|14334658|gb|AAK59507.1|
unknown protein [Arabidopsis thaliana]
gi|17104591|gb|AAL34184.1| unknown protein [Arabidopsis
thaliana]
Length = 333
Score = 77.0 bits (188), Expect = 2e-13
Identities = 35/45 (77%), Positives = 41/45 (90%)
Frame = -2
Query: 583 EANICVLASQIANLGESIIGAALQEKEGFQWLNNDAVNIINVSHG 449
EA +CVLASQIANLGESIIGA+ Q+KEGF+WLNND VN+IN+S G
Sbjct: 272 EAAVCVLASQIANLGESIIGASFQDKEGFKWLNNDVVNVINISLG 316
>dbj|BAB21160.1| P0456A01.17 [Oryza sativa (japonica cultivar-group)]
gi|15289813|dbj|BAB63511.1| P0435H01.5 [Oryza sativa
(japonica cultivar-group)]
Length = 309
Score = 50.8 bits (120), Expect = 1e-05
Identities = 23/36 (63%), Positives = 28/36 (76%)
Frame = -2
Query: 595 VGLHEANICVLASQIANLGESIIGAALQEKEGFQWL 488
V + + +CVLASQIAN ES IGA LQ+KEGF+WL
Sbjct: 254 VNVSQGAVCVLASQIANFCESYIGATLQDKEGFEWL 289
>ref|NP_485652.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25318850|pir||AF2007
hypothetical protein alr1612 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135432|dbj|BAB77978.1|
ORF_ID:alr1612~hypothetical protein [Nostoc sp. PCC
7120]
Length = 265
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/49 (48%), Positives = 30/49 (60%)
Frame = -2
Query: 571 CVLASQIANLGESIIGAALQEKEGFQWLNNDAVNIINVSHGQYHRSLIA 425
CVLA+ IA ES+IGA LQ K + WL N+ VNI+N G L+A
Sbjct: 211 CVLAALIATNLESVIGATLQSK--YTWLTNEIVNILNTLIGAIAAMLVA 257
>ref|ZP_00074885.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 261
Score = 42.0 bits (97), Expect = 0.006
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -2
Query: 571 CVLASQIANLGESIIGAALQEKEGFQWLNNDAVNIINVSHG 449
CV+++ IA ES+IGA +Q + F+WL N+ VNIIN S G
Sbjct: 208 CVISAFIATNLESLIGATMQSQ--FEWLTNEVVNIINTSIG 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,943,491
Number of Sequences: 1393205
Number of extensions: 9280666
Number of successful extensions: 16417
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16413
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
