Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003238A_C02 KMC003238A_c02
(1093 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195824.1| putative protein; protein id: At5g02040.1, supp... 155 9e-37
gb|AAM63057.1| unknown [Arabidopsis thaliana] 152 7e-36
ref|NP_683552.1| similar to CHP-rich zinc finger protein, putati... 147 1e-34
gb|AAL58894.1|AF462798_1 At3g11395 [Arabidopsis thaliana] gi|213... 147 1e-34
dbj|BAC43523.1| unknown protein [Arabidopsis thaliana] gi|289733... 146 3e-34
>ref|NP_195824.1| putative protein; protein id: At5g02040.1, supported by cDNA: 18955.,
supported by cDNA: gi_15028344, supported by cDNA:
gi_15810042, supported by cDNA: gi_19310650 [Arabidopsis
thaliana] gi|11358414|pir||T48225 hypothetical protein
T7H20.90 - Arabidopsis thaliana
gi|7340678|emb|CAB82977.1| putative protein [Arabidopsis
thaliana] gi|15028345|gb|AAK76649.1| unknown protein
[Arabidopsis thaliana] gi|19310651|gb|AAL85056.1| unknown
protein [Arabidopsis thaliana]
Length = 209
Score = 155 bits (392), Expect(2) = 9e-37
Identities = 76/101 (75%), Positives = 85/101 (83%)
Frame = -3
Query: 1091 EKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFV 912
EK TRTVR+FSP LAAKMRPPLTPV RGRP++KRAI++CG+PRWVFVL S SF LW++
Sbjct: 100 EKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYI 159
Query: 911 SAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR 789
S+GLL V AL I LATILHAS RTPNLKAR NTFREEFR
Sbjct: 160 SSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFR 200
Score = 21.6 bits (44), Expect(2) = 9e-37
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = -1
Query: 784 VWRNYSEL 761
VWRNYSE+
Sbjct: 202 VWRNYSEI 209
>gb|AAM63057.1| unknown [Arabidopsis thaliana]
Length = 209
Score = 152 bits (384), Expect(2) = 7e-36
Identities = 75/101 (74%), Positives = 84/101 (82%)
Frame = -3
Query: 1091 EKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFV 912
EK TRTV +FSP LAAKMRPPLTPV RGRP++KRAI++CG+PRWVFVL S SF LW++
Sbjct: 100 EKATRTVIRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYI 159
Query: 911 SAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR 789
S+GLL V AL I LATILHAS RTPNLKAR NTFREEFR
Sbjct: 160 SSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFR 200
Score = 21.6 bits (44), Expect(2) = 7e-36
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = -1
Query: 784 VWRNYSEL 761
VWRNYSE+
Sbjct: 202 VWRNYSEI 209
>ref|NP_683552.1| similar to CHP-rich zinc finger protein, putative; protein id:
At3g11402.1 [Arabidopsis thaliana]
Length = 916
Score = 147 bits (371), Expect(2) = 1e-34
Identities = 71/101 (70%), Positives = 82/101 (80%)
Frame = -3
Query: 1091 EKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFV 912
EK+ RT+R FSPHLAAKMRPP PVIRGR A ++ +YICG+PR VFVL+ +ASF+LWF
Sbjct: 807 EKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFT 866
Query: 911 SAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR 789
S GLL VL+AL LL +LHAS RTPNLKARLNTFREEFR
Sbjct: 867 SCGLLWVLYALTTALLMILLHASLRTPNLKARLNTFREEFR 907
Score = 22.3 bits (46), Expect(2) = 1e-34
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 784 VWRNYSEL 761
VWRNYSEL
Sbjct: 909 VWRNYSEL 916
>gb|AAL58894.1|AF462798_1 At3g11395 [Arabidopsis thaliana] gi|21360427|gb|AAM47329.1|
At3g11395/At3g11395 [Arabidopsis thaliana]
Length = 209
Score = 147 bits (371), Expect(2) = 1e-34
Identities = 71/101 (70%), Positives = 82/101 (80%)
Frame = -3
Query: 1091 EKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFV 912
EK+ RT+R FSPHLAAKMRPP PVIRGR A ++ +YICG+PR VFVL+ +ASF+LWF
Sbjct: 100 EKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFT 159
Query: 911 SAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR 789
S GLL VL+AL LL +LHAS RTPNLKARLNTFREEFR
Sbjct: 160 SCGLLWVLYALTTALLMILLHASLRTPNLKARLNTFREEFR 200
Score = 22.3 bits (46), Expect(2) = 1e-34
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 784 VWRNYSEL 761
VWRNYSEL
Sbjct: 202 VWRNYSEL 209
>dbj|BAC43523.1| unknown protein [Arabidopsis thaliana] gi|28973353|gb|AAO64001.1|
unknown protein [Arabidopsis thaliana]
Length = 209
Score = 146 bits (368), Expect(2) = 3e-34
Identities = 67/101 (66%), Positives = 80/101 (78%)
Frame = -3
Query: 1091 EKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFV 912
EK RT+R FSPH+AAKMRPP PVIRGR A++ +Y+CG+PRWVFV+ F +AS ++WF
Sbjct: 100 EKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFS 159
Query: 911 SAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFR 789
S GLL VL+AL L I+HAS RTPNLKARLNTFREEFR
Sbjct: 160 SCGLLWVLYALLTSLAVIIVHASIRTPNLKARLNTFREEFR 200
Score = 22.3 bits (46), Expect(2) = 3e-34
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 784 VWRNYSEL 761
VWRNYSEL
Sbjct: 202 VWRNYSEL 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 913,482,573
Number of Sequences: 1393205
Number of extensions: 20285316
Number of successful extensions: 52995
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 49477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52867
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65340192036
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
