Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003237A_C01 KMC003237A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64738.1| unknown [Arabidopsis thaliana] 195 4e-49
ref|NP_565538.1| Expressed protein; protein id: At2g22475.1, sup... 195 4e-49
dbj|BAC43153.1| unknown protein [Arabidopsis thaliana] 191 5e-48
gb|AAN64136.1| Putative FH protein interacting protein FIP1 [Ory... 189 2e-47
ref|NP_174141.1| FH protein interacting protein FIP1; protein id... 185 4e-46
>gb|AAM64738.1| unknown [Arabidopsis thaliana]
Length = 299
Score = 195 bits (496), Expect = 4e-49
Identities = 88/116 (75%), Positives = 106/116 (90%)
Frame = -3
Query: 622 FRQTFQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYY 443
FRQTF+T PEEQL+ ++ACYLSTSAGPVMGVLY+S+AKLA+CSDNPLSY+ G++T+WSYY
Sbjct: 177 FRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYY 236
Query: 442 KVVIPLHQLRAVNPSISRTNPSEKYIQIISVDNHEFWFMGFVHYDSAVKHIQELLQ 275
KVVIPLHQL+AVNPS S NP+EKYIQ+ISVDNHEFWFMGF++YD AV +Q+ LQ
Sbjct: 237 KVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQ 292
>ref|NP_565538.1| Expressed protein; protein id: At2g22475.1, supported by cDNA:
32573. [Arabidopsis thaliana] gi|20197888|gb|AAM15301.1|
Expressed protein [Arabidopsis thaliana]
Length = 299
Score = 195 bits (496), Expect = 4e-49
Identities = 88/116 (75%), Positives = 106/116 (90%)
Frame = -3
Query: 622 FRQTFQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYY 443
FRQTF+T PEEQL+ ++ACYLSTSAGPVMGVLY+S+AKLA+CSDNPLSY+ G++T+WSYY
Sbjct: 177 FRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYY 236
Query: 442 KVVIPLHQLRAVNPSISRTNPSEKYIQIISVDNHEFWFMGFVHYDSAVKHIQELLQ 275
KVVIPLHQL+AVNPS S NP+EKYIQ+ISVDNHEFWFMGF++YD AV +Q+ LQ
Sbjct: 237 KVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQ 292
>dbj|BAC43153.1| unknown protein [Arabidopsis thaliana]
Length = 299
Score = 191 bits (486), Expect = 5e-48
Identities = 87/116 (75%), Positives = 105/116 (90%)
Frame = -3
Query: 622 FRQTFQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYY 443
FRQTF+T PEEQL+ ++ACYLSTSAG VMGVLY+S+AKLA+CSDNPLSY+ G++T+WSYY
Sbjct: 177 FRQTFETDPEEQLLNSFACYLSTSAGLVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYY 236
Query: 442 KVVIPLHQLRAVNPSISRTNPSEKYIQIISVDNHEFWFMGFVHYDSAVKHIQELLQ 275
KVVIPLHQL+AVNPS S NP+EKYIQ+ISVDNHEFWFMGF++YD AV +Q+ LQ
Sbjct: 237 KVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQ 292
>gb|AAN64136.1| Putative FH protein interacting protein FIP1 [Oryza sativa
(japonica cultivar-group)]
Length = 264
Score = 189 bits (481), Expect = 2e-47
Identities = 87/116 (75%), Positives = 102/116 (87%)
Frame = -3
Query: 622 FRQTFQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYY 443
F QTF +P+E+L + YACYLSTSAGPVMGVLYLS KLAFCSDNPL+Y+ G++ +WSYY
Sbjct: 142 FHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSYY 201
Query: 442 KVVIPLHQLRAVNPSISRTNPSEKYIQIISVDNHEFWFMGFVHYDSAVKHIQELLQ 275
KVVIP QLR+VNPS SRTN SEKYIQ++SVDNHEFWFMGFV+YDSAVK++QE LQ
Sbjct: 202 KVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQ 257
>ref|NP_174141.1| FH protein interacting protein FIP1; protein id: At1g28200.1,
supported by cDNA: 30245., supported by cDNA:
gi_13877828, supported by cDNA: gi_15912222, supported
by cDNA: gi_16323497, supported by cDNA: gi_6503011
[Arabidopsis thaliana] gi|25344199|pir||A86408 FH
protein interacting protein FIP1 [imported] -
Arabidopsis thaliana gi|6503012|gb|AAF14549.1|AF174428_1
FH protein interacting protein FIP1 [Arabidopsis
thaliana] gi|9795617|gb|AAF98435.1|AC021044_14 FH
protein interacting protein FIP1 [Arabidopsis thaliana]
gi|13877829|gb|AAK43992.1|AF370177_1 putative FH protein
interacting protein FIP1 [Arabidopsis thaliana]
gi|15912223|gb|AAL08245.1| At1g28200/F3H9_12
[Arabidopsis thaliana] gi|16323498|gb|AAL15243.1|
putative FH protein interacting protein FIP1
[Arabidopsis thaliana] gi|21592606|gb|AAM64555.1| FH
protein interacting protein FIP1 [Arabidopsis thaliana]
Length = 259
Score = 185 bits (470), Expect = 4e-46
Identities = 84/116 (72%), Positives = 103/116 (88%)
Frame = -3
Query: 622 FRQTFQTVPEEQLVRTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGEETQWSYY 443
F+QTF +P+E+L++TYACYLSTSAGPV+GV+YLST KLAF SDNPLSY+ GE+T WSYY
Sbjct: 140 FKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYY 199
Query: 442 KVVIPLHQLRAVNPSISRTNPSEKYIQIISVDNHEFWFMGFVHYDSAVKHIQELLQ 275
KVV+P +QL+AVNPS SR N S+KYIQ+IS+DNHEFWFMGFV Y+SAVK +QE +Q
Sbjct: 200 KVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQ 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,707,465
Number of Sequences: 1393205
Number of extensions: 11169579
Number of successful extensions: 26442
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 25121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26407
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
