Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003236A_C01 KMC003236A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75591.1| MtN12 [Medicago truncatula] 93 2e-18
gb|AAK77904.1|AF397032_1 root nodule extensin [Pisum sativum] 89 4e-17
gb|AAK77903.1|AF397031_1 root nodule extensin [Pisum sativum] 82 4e-15
gb|AAB28462.1| extensin=nodule-specific proline-rich protein {cl... 82 4e-15
gb|AAK77898.1|AF397026_1 root nodule extensin [Pisum sativum] 81 6e-15
>emb|CAA75591.1| MtN12 [Medicago truncatula]
Length = 113
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 8/78 (10%)
Frame = -2
Query: 501 PISHSPPPPGQTYPPYIPNPIFLSPPPPF--------PISHSPPPPVQTYPPNIPIPIDH 346
P+ HSPPPP TYP P++ SPPPP P+ HSPPPPV TYPP++P P+ H
Sbjct: 33 PVYHSPPPPVHTYP----KPVYHSPPPPVHTYVPHPKPVYHSPPPPVHTYPPHVPHPVYH 88
Query: 345 SPPPVPINHAPPPPPYHH 292
SPPP P+ H+PPPP Y++
Sbjct: 89 SPPP-PV-HSPPPPHYYY 104
Score = 77.4 bits (189), Expect = 8e-14
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 14/80 (17%)
Frame = -2
Query: 501 PISHSPPPPGQTYPPYIPNPIFLSPPPPF-----PISHSPPPPVQTYPPNI-------PI 358
P+ HSPPPP TYP P P++ SPPPP P+ HSPPPPV TY P+ P
Sbjct: 16 PVYHSPPPPVHTYPH--PKPVYHSPPPPVHTYPKPVYHSPPPPVHTYVPHPKPVYHSPPP 73
Query: 357 PIDHSPP--PVPINHAPPPP 304
P+ PP P P+ H+PPPP
Sbjct: 74 PVHTYPPHVPHPVYHSPPPP 93
Score = 70.9 bits (172), Expect = 8e-12
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Frame = -2
Query: 498 ISHSPPPP-GQTYPPYIPNPIFLSPPPPF-------PISHSPPPPVQTYPPNIPIPIDHS 343
+ HSPPPP TYP P++ SPPPP P+ HSPPPPV TYP P+ HS
Sbjct: 1 VYHSPPPPVHHTYP----KPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPK----PVYHS 52
Query: 342 PP---------PVPINHAPPPP 304
PP P P+ H+PPPP
Sbjct: 53 PPPPVHTYVPHPKPVYHSPPPP 74
Score = 68.9 bits (167), Expect = 3e-11
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = -2
Query: 501 PISHSPPPPGQTYPPYIPNPIFLSPPPPFPISHSPPPPVQTYPPNIPIPIDHSPPPVPIN 322
P+ HSPPPP TYPP++P+P++ HSPPPPV HSPPP
Sbjct: 66 PVYHSPPPPVHTYPPHVPHPVY----------HSPPPPV------------HSPPPPHYY 103
Query: 321 HAPPPPPYHH 292
+ PPPPYH+
Sbjct: 104 YKSPPPPYHN 113
Score = 42.7 bits (99), Expect = 0.002
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 411 ISHSPPPPVQ-TYPPNIPIPIDHSPPPVPINHAPPPPPYHHT 289
+ HSPPPPV TYP P+ HSPPP P++ P P P +H+
Sbjct: 1 VYHSPPPPVHHTYPK----PVYHSPPP-PVHTYPHPKPVYHS 37
>gb|AAK77904.1|AF397032_1 root nodule extensin [Pisum sativum]
Length = 137
Score = 88.6 bits (218), Expect = 4e-17
Identities = 42/85 (49%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Frame = -2
Query: 501 PISHSPPPPGQTYPPYIPNPIFLSPPPPFPISHS--------PPPPVQTYPPNIPIPIDH 346
P+ HSPPPP TYP P+P++ SPPPP P H PPPP TYPP++P P+ H
Sbjct: 56 PVYHSPPPPVHTYPH--PHPVYHSPPPP-PTPHKKPYKYPSPPPPPAHTYPPHVPTPVYH 112
Query: 345 SPPPVPINHAPP-------PPPYHH 292
SPPP + PP PPPYHH
Sbjct: 113 SPPPPVYSPPPPAYYYKSPPPPYHH 137
Score = 74.7 bits (182), Expect = 5e-13
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Frame = -2
Query: 486 PPPPGQTYPPYIPNPIFLSPPP----PFPISHSPPPPVQTYPPNIPIPIDHSPPPV---- 331
PPPP TYP P+P++ SPPP P+ S PPPPV TYP P P+ HSPPP
Sbjct: 13 PPPPVHTYPH--PHPVYHSPPPPHKKPYKYSSPPPPPVHTYPH--PHPVYHSPPPPVHTY 68
Query: 330 ----PINHAPPPPPYHH 292
P+ H+PPPPP H
Sbjct: 69 PHPHPVYHSPPPPPTPH 85
Score = 72.4 bits (176), Expect = 3e-12
Identities = 40/84 (47%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Frame = -2
Query: 501 PISHSPPPPGQTYPPYIPNPIFLSPPP--------PFPISHSPPPPVQTYPPNIPIPIDH 346
P+ HSPPPP + PY + SPPP P P+ HSPPPPV TYP P P+ H
Sbjct: 25 PVYHSPPPPHKK--PYK----YSSPPPPPVHTYPHPHPVYHSPPPPVHTYPH--PHPVYH 76
Query: 345 SPPPVPINH-------APPPPPYH 295
SPPP P H +PPPPP H
Sbjct: 77 SPPPPPTPHKKPYKYPSPPPPPAH 100
Score = 47.8 bits (112), Expect = 7e-05
Identities = 23/47 (48%), Positives = 27/47 (56%), Gaps = 3/47 (6%)
Frame = -2
Query: 420 PFPISHSPPPPVQTYPPNIPIPIDHSPPP---VPINHAPPPPPYHHT 289
P+ PPPPV TYP P P+ HSPPP P ++ PPPP HT
Sbjct: 6 PYKYPSPPPPPVHTYPH--PHPVYHSPPPPHKKPYKYSSPPPPPVHT 50
>gb|AAK77903.1|AF397031_1 root nodule extensin [Pisum sativum]
Length = 120
Score = 81.6 bits (200), Expect = 4e-15
Identities = 41/84 (48%), Positives = 48/84 (56%), Gaps = 16/84 (19%)
Frame = -2
Query: 495 SHSPPPPGQTYPPYIPNPIFLSPPPPFPISHS--------PPPPVQTYPPNIPIPIDHSP 340
S PPPP TYP P+P++ SPPPP P H PPPP TYPP++P P+ HSP
Sbjct: 41 SSPPPPPVHTYPH--PHPVYHSPPPP-PTPHKKPYKYPSPPPPPAHTYPPHVPTPVYHSP 97
Query: 339 PPVPINHAP--------PPPPYHH 292
PP P+ P PPPPYHH
Sbjct: 98 PP-PVYSPPPPAYYYKSPPPPYHH 120
Score = 74.3 bits (181), Expect = 7e-13
Identities = 38/75 (50%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Frame = -2
Query: 486 PPPPGQTYPPYIPNPIFLSPPPP----FPISHSPPPPVQTYPPNIPIPIDHSPPPVPINH 319
PPPP TYP P+P++ SPPPP + S PPPPV TYP P P+ HSPPP P H
Sbjct: 13 PPPPVHTYPH--PHPVYHSPPPPHKKPYKYSSPPPPPVHTYPH--PHPVYHSPPPPPTPH 68
Query: 318 -------APPPPPYH 295
+PPPPP H
Sbjct: 69 KKPYKYPSPPPPPAH 83
Score = 47.8 bits (112), Expect = 7e-05
Identities = 23/47 (48%), Positives = 27/47 (56%), Gaps = 3/47 (6%)
Frame = -2
Query: 420 PFPISHSPPPPVQTYPPNIPIPIDHSPPP---VPINHAPPPPPYHHT 289
P+ PPPPV TYP P P+ HSPPP P ++ PPPP HT
Sbjct: 6 PYKYPSPPPPPVHTYPH--PHPVYHSPPPPHKKPYKYSSPPPPPVHT 50
>gb|AAB28462.1| extensin=nodule-specific proline-rich protein {clone VfNDS-E}
[Vicia faba=broadbeans, root nodules, Peptide Partial,
116 aa]
Length = 116
Score = 81.6 bits (200), Expect = 4e-15
Identities = 41/81 (50%), Positives = 48/81 (58%), Gaps = 16/81 (19%)
Frame = -2
Query: 486 PPPPGQTYPPYIPNPIFLSPPPPFPISHS--------PPPPVQTYPPNIPIPIDHSPPPV 331
PPPP TYP P+P++ SPPPP P H PPPPV TYPP++P P+ HSPPP
Sbjct: 40 PPPPVHTYPH--PHPVYHSPPPP-PTPHKKPYKYPSPPPPPVHTYPPHVPHPVYHSPPP- 95
Query: 330 PINHAP--------PPPPYHH 292
P+ P PPPPYHH
Sbjct: 96 PVYSPPPPHYYYKSPPPPYHH 116
Score = 68.9 bits (167), Expect = 3e-11
Identities = 39/83 (46%), Positives = 45/83 (53%), Gaps = 16/83 (19%)
Frame = -2
Query: 495 SHSPPPPGQTYPPYIPNPIFLSPPPP---------FPISHSPPPPVQTYPPNIPIPIDHS 343
S+S PPP TYP P+P + SPPPP +P PPPPV TYP P P+ HS
Sbjct: 3 SYSSPPPVHTYPH--PHPFYHSPPPPPTPHKKPYKYPS--PPPPPVHTYPH--PHPVYHS 56
Query: 342 PPPVPINH-------APPPPPYH 295
PPP P H +PPPPP H
Sbjct: 57 PPPPPTPHKKPYKYPSPPPPPVH 79
Score = 37.7 bits (86), Expect = 0.073
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2
Query: 408 SHSPPPPVQTYPPNIPIPIDHSPPPVPINHAPPPPPYHH 292
S+S PPPV TYP P P H+PPPPP H
Sbjct: 3 SYSSPPPVHTYPH-----------PHPFYHSPPPPPTPH 30
>gb|AAK77898.1|AF397026_1 root nodule extensin [Pisum sativum]
Length = 183
Score = 81.3 bits (199), Expect = 6e-15
Identities = 39/80 (48%), Positives = 46/80 (56%), Gaps = 15/80 (18%)
Frame = -2
Query: 486 PPPPGQTYPPYIPNPIFLSPPPPFPISHS--------PPPPVQTYPPNIPIPIDHSPPPV 331
PPPP TYP P+P++ SPPPP P H PPPP TYPP++P P+ HSPPP
Sbjct: 107 PPPPVHTYPH--PHPVYHSPPPP-PTPHKKPYKYPSPPPPPAHTYPPHVPTPVYHSPPPP 163
Query: 330 PINHAPP-------PPPYHH 292
+ PP PPPYHH
Sbjct: 164 AYSPPPPAYYYKSPPPPYHH 183
Score = 70.9 bits (172), Expect = 8e-12
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Frame = -2
Query: 486 PPPPGQTYPPYIPNPIFLSPPPPF-------PISHSPPPPVQ-----TYPPNIPIPIDHS 343
PPPP TYP P+P++ SPPPP P+ HSPPPP YP P P+
Sbjct: 57 PPPPVHTYPH--PHPVYHSPPPPVHTYPHPHPVYHSPPPPTPHKKPYKYPSPPPPPVHTY 114
Query: 342 PPPVPINHAPPPPPYHH 292
P P P+ H+PPPPP H
Sbjct: 115 PHPHPVYHSPPPPPTPH 131
Score = 70.1 bits (170), Expect = 1e-11
Identities = 39/80 (48%), Positives = 45/80 (55%), Gaps = 11/80 (13%)
Frame = -2
Query: 501 PISHSPPPPGQTY----PPYIPNPIFLSPPPPFPISHSPPPPVQTYPPNIPIPIDHSPPP 334
P HSPPPP + PP P P+ + P P P+ HSPPPPV TYP P P+ HSPPP
Sbjct: 37 PPVHSPPPPKDPHHYSSPPPPPPPVH-TYPHPHPVYHSPPPPVHTYPH--PHPVYHSPPP 93
Query: 333 VPINH-------APPPPPYH 295
P H +PPPPP H
Sbjct: 94 -PTPHKKPYKYPSPPPPPVH 112
Score = 58.9 bits (141), Expect = 3e-08
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -2
Query: 495 SHSPPPPGQTYPPYIPNPIFLSPPPPFPISHSPPPPVQTYPPNIPIPIDHSPPPVPINHA 316
S+S PPP PP +P S PPP PPPPV TYP P P+ HSPPP P++
Sbjct: 31 SYSSPPPPVHSPPPPKDPHHYSSPPP------PPPPVHTYPH--PHPVYHSPPP-PVHTY 81
Query: 315 PPPPPYHHT 289
P P P +H+
Sbjct: 82 PHPHPVYHS 90
Score = 44.3 bits (103), Expect = 8e-04
Identities = 28/69 (40%), Positives = 32/69 (45%), Gaps = 21/69 (30%)
Frame = -2
Query: 438 FLSPPPPFPIS-------------HSPPPPVQTYPPNIPIPIDHSPPPV--------PIN 322
+ SPPPP S PPPPV TYP P P+ HSPPP P+
Sbjct: 32 YSSPPPPVH-SPPPPKDPHHYSSPPPPPPPVHTYPH--PHPVYHSPPPPVHTYPHPHPVY 88
Query: 321 HAPPPPPYH 295
H+PPPP H
Sbjct: 89 HSPPPPTPH 97
Score = 32.7 bits (73), Expect = 2.4
Identities = 23/59 (38%), Positives = 25/59 (41%), Gaps = 8/59 (13%)
Frame = -2
Query: 441 IFLSPPPPFPISH----SPPPPVQTYPPNIPIPIDHSPPPVPINH----APPPPPYHHT 289
+FLS P + SPPPPV HSPPP H PPPPP HT
Sbjct: 17 LFLSFPSEISANQYSYSSPPPPV------------HSPPPPKDPHHYSSPPPPPPPVHT 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,961,379
Number of Sequences: 1393205
Number of extensions: 16880060
Number of successful extensions: 259787
Number of sequences better than 10.0: 6544
Number of HSP's better than 10.0 without gapping: 70278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154073
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
