Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003235A_C01 KMC003235A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00111015.1| hypothetical protein [Nostoc punctiforme] 35 0.78
gb|EAA32698.1| hypothetical protein [Neurospora crassa] 35 0.78
ref|NP_509770.2| Female sterile homeotic protein family member [... 35 1.0
ref|NP_509771.1| RING3 [Caenorhabditis elegans] gi|7504520|pir||... 35 1.0
pir||T22845 hypothetical protein F57C7.1a - Caenorhabditis elegans 35 1.0
>gb|ZP_00111015.1| hypothetical protein [Nostoc punctiforme]
Length = 1384
Score = 35.0 bits (79), Expect = 0.78
Identities = 27/93 (29%), Positives = 39/93 (41%)
Frame = +3
Query: 144 TGYPVQDKDMATRNDQFPSKFNLVLQQLTSMTKYQHSLTLS*SLASTTANNSCHNQITGV 323
TG P D D A D +F QQ TS+T+ H + +L + QITG+
Sbjct: 591 TGIPGADPDYAMWGDYNTEEFARRSQQFTSITRQLHGFKANYNLGNL--------QITGL 642
Query: 324 QNVHHKHKGGDEVMPDSPSPFMCFTLRDKEMGS 422
H + D + PD S + + R + GS
Sbjct: 643 YGNHLEAFQRDTIAPDGTSGYYFLSRRILQPGS 675
>gb|EAA32698.1| hypothetical protein [Neurospora crassa]
Length = 689
Score = 35.0 bits (79), Expect = 0.78
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 3/81 (3%)
Frame = +3
Query: 372 SPSPFMCFT-LRDKEMGSISTSSSVPTPELFDDTLDSVF--AKTAAIEEPESSFATEESF 542
SPS FT + + S +T SS PT L ++ +KTA +PE+++ T E
Sbjct: 386 SPSKVFRFTGILQRPKPSQNTGSSGPTRFLASPQSHTIAESSKTAESRKPENAWQTPEYL 445
Query: 543 KDSSEKWETATLGKLRRAEEP 605
+ + W A + +RR +P
Sbjct: 446 RSLDDLWRPARVATVRRTSQP 466
>ref|NP_509770.2| Female sterile homeotic protein family member [Caenorhabditis
elegans] gi|22265870|emb|CAA93473.3| Hypothetical protein
F57C7.1a [Caenorhabditis elegans]
Length = 1209
Score = 34.7 bits (78), Expect = 1.0
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +3
Query: 216 LQQLTSMTKYQHSLTLS*---SLASTTANNSCHNQITGVQNVHHKHKGGDEVMPDSPSPF 386
L+QL SM++ +++ + LA TA NQ++ ++ + K ++P+ SP
Sbjct: 708 LEQLRSMSEGLYTIAMQRREAKLAGNTAPALAQNQLSQLEGLGISIKSTPMMIPELISPA 767
Query: 387 MCFTLRDKEMGSISTSSSVPTPELFDDTLDSVFAKTAAIEEPESSFATEES 539
+ S+ +SS P P++ DD S K I +P +S A+ S
Sbjct: 768 L----------SVRSSSRAPVPKIIDDIGPSPI-KARKISKPRASMASNVS 807
>ref|NP_509771.1| RING3 [Caenorhabditis elegans] gi|7504520|pir||T22847 hypothetical
protein F57C7.1b - Caenorhabditis elegans
gi|3877722|emb|CAA93475.1| Hypothetical protein F57C7.1b
[Caenorhabditis elegans]
Length = 1087
Score = 34.7 bits (78), Expect = 1.0
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +3
Query: 216 LQQLTSMTKYQHSLTLS*---SLASTTANNSCHNQITGVQNVHHKHKGGDEVMPDSPSPF 386
L+QL SM++ +++ + LA TA NQ++ ++ + K ++P+ SP
Sbjct: 708 LEQLRSMSEGLYTIAMQRREAKLAGNTAPALAQNQLSQLEGLGISIKSTPMMIPELISPA 767
Query: 387 MCFTLRDKEMGSISTSSSVPTPELFDDTLDSVFAKTAAIEEPESSFATEES 539
+ S+ +SS P P++ DD S K I +P +S A+ S
Sbjct: 768 L----------SVRSSSRAPVPKIIDDIGPSPI-KARKISKPRASMASNVS 807
>pir||T22845 hypothetical protein F57C7.1a - Caenorhabditis elegans
Length = 1250
Score = 34.7 bits (78), Expect = 1.0
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +3
Query: 216 LQQLTSMTKYQHSLTLS*---SLASTTANNSCHNQITGVQNVHHKHKGGDEVMPDSPSPF 386
L+QL SM++ +++ + LA TA NQ++ ++ + K ++P+ SP
Sbjct: 748 LEQLRSMSEGLYTIAMQRREAKLAGNTAPALAQNQLSQLEGLGISIKSTPMMIPELISPA 807
Query: 387 MCFTLRDKEMGSISTSSSVPTPELFDDTLDSVFAKTAAIEEPESSFATEES 539
+ S+ +SS P P++ DD S K I +P +S A+ S
Sbjct: 808 L----------SVRSSSRAPVPKIIDDIGPSPI-KARKISKPRASMASNVS 847
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,868,967
Number of Sequences: 1393205
Number of extensions: 11731446
Number of successful extensions: 29966
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 28885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29945
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
