Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003234A_C01 KMC003234A_c01
(423 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704184.1| hypothetical protein [Plasmodium falciparum 3D7... 32 1.4
gb|AAB31741.1| alpha tubulin suppressor [Saccharomyces cerevisia... 31 3.1
ref|NP_009382.1| Protein with similarity to human RCC1 protein; ... 31 3.1
gb|AAA63147.1| puff C4B protein gi|699400|gb|AAA63148.1| puff C4... 30 5.3
ref|NP_506632.1| Serine threonine protein phosphatase family mem... 30 5.3
>ref|NP_704184.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498922|emb|CAD51000.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1576
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/49 (36%), Positives = 28/49 (56%)
Frame = +2
Query: 20 LSFLGKSDTNIL*IGFNVIQSSRRALRNAYN*KLVYKILEKTEKDLHKN 166
+SF S NI+ + +N+I S + + N Y K Y +EK EKD +K+
Sbjct: 691 ISFSYNSIENIIHLCYNIILLSYKDIVNLYTMKNEYLYIEKNEKDKNKD 739
>gb|AAB31741.1| alpha tubulin suppressor [Saccharomyces cerevisiae, Peptide, 332
aa]
Length = 332
Score = 31.2 bits (69), Expect = 3.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 319 LIIDADGNILRRVGNCTHDTTNRKLLDNDHSQVSLYGSWK 200
+I+DADG + +R G C T L+++ ++++YG ++
Sbjct: 100 VIVDADGRVWQRGGGCYEFTQQHVPLNSNDERIAVYGCFQ 139
>ref|NP_009382.1| Protein with similarity to human RCC1 protein; Ats1p [Saccharomyces
cerevisiae] gi|401439|sp|P31386|ATS1_YEAST ATS1 protein
(Alpha-tubulin suppressor 1) gi|486965|pir||S36714
alpha-tubulin suppressor ATS1 - yeast (Saccharomyces
cerevisiae) gi|171855|gb|AAC04937.1| Ats1p
[Saccharomyces cerevisiae]
Length = 333
Score = 31.2 bits (69), Expect = 3.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 319 LIIDADGNILRRVGNCTHDTTNRKLLDNDHSQVSLYGSWK 200
+I+DADG + +R G C T L+++ ++++YG ++
Sbjct: 100 VIVDADGRVWQRGGGCYEFTQQHVPLNSNDERIAVYGCFQ 139
>gb|AAA63147.1| puff C4B protein gi|699400|gb|AAA63148.1| puff C4B protein
Length = 286
Score = 30.4 bits (67), Expect = 5.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 70 CDPKLKACIKKCLQLKACIQNPRKN*KRSTQES 168
C+ +L C K+C QLKA I+ R+ KR +E+
Sbjct: 186 CEKRLADCEKECAQLKAEIEKLRETIKRLEEEN 218
>ref|NP_506632.1| Serine threonine protein phosphatase family member [Caenorhabditis
elegans] gi|7506455|pir||T31469 probable phosphoprotein
phosphatase (EC 3.1.3.16) R08A2.2 [similarity] -
Caenorhabditis elegans gi|6018394|emb|CAB57902.1|
Hypothetical protein R08A2.2 [Caenorhabditis elegans]
Length = 386
Score = 30.4 bits (67), Expect = 5.3
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +2
Query: 101 NAYN*KLVYKILEKTEKDLHKNHSGMHVEEPMSFPTSIQRNLGMII 238
+A+N K +Y ILEK E L+ + + VE P++ I L +I
Sbjct: 34 DAFNDKQIYTILEKAESTLNPLPAMLQVEHPITIVGDIHGQLDALI 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,554,917
Number of Sequences: 1393205
Number of extensions: 6535364
Number of successful extensions: 12712
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12709
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
