Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003233A_C01 KMC003233A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179705.1| unknown protein; protein id: At2g21090.1 [Arabi... 56 3e-07
ref|NP_179798.1| hypothetical protein; protein id: At2g22070.1 [... 49 3e-05
ref|NP_180329.1| putative selenium-binding protein; protein id: ... 49 5e-05
dbj|BAB19402.1| P0458A05.10 [Oryza sativa (japonica cultivar-gro... 49 5e-05
gb|AAM15176.1| putative selenium-binding protein [Arabidopsis th... 49 5e-05
>ref|NP_179705.1| unknown protein; protein id: At2g21090.1 [Arabidopsis thaliana]
gi|25346340|pir||A84597 hypothetical protein At2g21090
[imported] - Arabidopsis thaliana
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis
thaliana]
Length = 597
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Frame = -3
Query: 538 KWGLVDNARPI-DEIRVRKDQALTWIEIENKVHAFTVSDGS--HPLKETIYSSLGYLSSQ 368
KW LV+ R + + RV K++A++WIEIE KV AFTVSDGS H KE IY L L++
Sbjct: 530 KWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAV 589
Query: 367 MQGQA 353
++ +A
Sbjct: 590 IEEEA 594
>ref|NP_179798.1| hypothetical protein; protein id: At2g22070.1 [Arabidopsis
thaliana] gi|25345463|pir||F84608 hypothetical protein
At2g22070 [imported] - Arabidopsis thaliana
gi|4587589|gb|AAD25817.1| hypothetical protein
[Arabidopsis thaliana]
Length = 786
Score = 49.3 bits (116), Expect = 3e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = -3
Query: 496 RVRKDQALTWIEIENKVHAFTVSDGSHPLKETIYSSL 386
RV+K+Q +WIE+++KVH F V DG+HP K IY ++
Sbjct: 647 RVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTM 683
>ref|NP_180329.1| putative selenium-binding protein; protein id: At2g27610.1
[Arabidopsis thaliana] gi|25354625|pir||G84674 probable
selenium-binding protein [imported] - Arabidopsis
thaliana gi|3860271|gb|AAC73039.1| putative
selenium-binding protein [Arabidopsis thaliana]
Length = 868
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/49 (40%), Positives = 34/49 (68%)
Frame = -3
Query: 508 IDEIRVRKDQALTWIEIENKVHAFTVSDGSHPLKETIYSSLGYLSSQMQ 362
++E V+K+ +WIE++NK ++F D SHPLK+ IY L LS++++
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 772
>dbj|BAB19402.1| P0458A05.10 [Oryza sativa (japonica cultivar-group)]
Length = 784
Score = 48.5 bits (114), Expect = 5e-05
Identities = 22/58 (37%), Positives = 35/58 (59%), Gaps = 1/58 (1%)
Frame = -3
Query: 535 WGLVDNARPI-DEIRVRKDQALTWIEIENKVHAFTVSDGSHPLKETIYSSLGYLSSQM 365
W V R + + ++K+ A++WIE+++KVH F V D SHP+ + IY+ L L M
Sbjct: 631 WNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLM 688
>gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/49 (40%), Positives = 34/49 (68%)
Frame = -3
Query: 508 IDEIRVRKDQALTWIEIENKVHAFTVSDGSHPLKETIYSSLGYLSSQMQ 362
++E V+K+ +WIE++NK ++F D SHPLK+ IY L LS++++
Sbjct: 328 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,883,251
Number of Sequences: 1393205
Number of extensions: 10311241
Number of successful extensions: 25106
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 24322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25102
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
