Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003232A_C01 KMC003232A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52377 pRIB5 protein [imported] - Ribes nigrum (fragment) g... 143 2e-33
gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana] 134 1e-30
ref|NP_191604.1| putative protein; protein id: At3g60450.1, supp... 134 1e-30
ref|NP_191603.1| putative protein; protein id: At3g60440.1 [Arab... 122 3e-27
ref|NP_191602.1| putative protein; protein id: At3g60430.1 [Arab... 111 8e-24
>pir||T52377 pRIB5 protein [imported] - Ribes nigrum (fragment)
gi|3378491|emb|CAA07566.1| pRIB5 protein [Ribes nigrum]
Length = 258
Score = 143 bits (360), Expect = 2e-33
Identities = 68/124 (54%), Positives = 87/124 (69%), Gaps = 1/124 (0%)
Frame = -2
Query: 595 DGNWGFDVSEREALLPAGTVDSNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTEN 416
+GNWGFD S E+ P GTVD + E +YK++P+WEE V RARY + I+ LADKYPTEN
Sbjct: 130 NGNWGFDKSHLESTFPVGTVDHSVEPLYKEMPKWEETVNGARARYEEVIQALADKYPTEN 189
Query: 415 LLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPI-YQKDHTFTSGDFDLLTQSGQT 239
LL VTHGEGV VA++ F KD V E YC Y RR I K+ +FT+ +F++L + GQT
Sbjct: 190 LLLVTHGEGVGVAVSAFMKDVTVYEADYCAYTHARRSIVLGKNQSFTAENFEVLPKQGQT 249
Query: 238 GVTY 227
GV+Y
Sbjct: 250 GVSY 253
>gb|AAM62796.1| pRIB5 protein [Arabidopsis thaliana]
Length = 274
Score = 134 bits (336), Expect = 1e-30
Identities = 62/123 (50%), Positives = 80/123 (64%)
Frame = -2
Query: 595 DGNWGFDVSEREALLPAGTVDSNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTEN 416
DG + F VS+ E + P G VD N + VYK+LP+WEE V R RY K +K LADKYP EN
Sbjct: 136 DGKFDFTVSDIETMFPEGMVDHNVDMVYKELPKWEESVEGCRDRYVKVVKALADKYPEEN 195
Query: 415 LLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPIYQKDHTFTSGDFDLLTQSGQTG 236
LL VTHGEGV +TF KD V EV YC YVE RR + +D + +GD++++ GQ G
Sbjct: 196 LLLVTHGEGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGDYEVVLSHGQAG 255
Query: 235 VTY 227
+ +
Sbjct: 256 IRF 258
>ref|NP_191604.1| putative protein; protein id: At3g60450.1, supported by cDNA:
15792. [Arabidopsis thaliana] gi|11281606|pir||T47856
hypothetical protein T8B10.110 - Arabidopsis thaliana
gi|7287993|emb|CAB81831.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 134 bits (336), Expect = 1e-30
Identities = 62/123 (50%), Positives = 80/123 (64%)
Frame = -2
Query: 595 DGNWGFDVSEREALLPAGTVDSNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTEN 416
DG + F VS+ E + P G VD N + VYK+LP+WEE V R RY K +K LADKYP EN
Sbjct: 136 DGKFDFTVSDIETMFPEGMVDHNVDMVYKELPKWEESVEGCRDRYVKVVKALADKYPEEN 195
Query: 415 LLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPIYQKDHTFTSGDFDLLTQSGQTG 236
LL VTHGEGV +TF KD V EV YC YVE RR + +D + +GD++++ GQ G
Sbjct: 196 LLLVTHGEGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVKAGDYEVVLSHGQAG 255
Query: 235 VTY 227
+ +
Sbjct: 256 IRF 258
>ref|NP_191603.1| putative protein; protein id: At3g60440.1 [Arabidopsis thaliana]
gi|11281607|pir||T47855 hypothetical protein T8B10.100 -
Arabidopsis thaliana gi|7287992|emb|CAB81830.1| putative
protein [Arabidopsis thaliana]
gi|28392891|gb|AAO41882.1| unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 122 bits (306), Expect = 3e-27
Identities = 61/127 (48%), Positives = 80/127 (62%)
Frame = -2
Query: 595 DGNWGFDVSEREALLPAGTVDSNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTEN 416
DG + F +SE EA+ P G VD + + VYK++PQWEE V R+ IK LADKYP+EN
Sbjct: 136 DGKFDFMISELEAIFPDGMVDHSVDPVYKEMPQWEETVEGCTDRFLSLIKTLADKYPSEN 195
Query: 415 LLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPIYQKDHTFTSGDFDLLTQSGQTG 236
LL VTHGEGV TF K V +V+YCG E RR + KD + +GDF+++T Q G
Sbjct: 196 LLLVTHGEGVRTTFATF-KGVHVYDVEYCGCAELRRQVSSKDGSTKAGDFEVITSLSQCG 254
Query: 235 VTYFTSS 215
+ Y + S
Sbjct: 255 IKYHSLS 261
>ref|NP_191602.1| putative protein; protein id: At3g60430.1 [Arabidopsis thaliana]
gi|11281608|pir||T47854 hypothetical protein T8B10.90 -
Arabidopsis thaliana gi|7287991|emb|CAB81829.1| putative
protein [Arabidopsis thaliana]
Length = 258
Score = 111 bits (277), Expect = 8e-24
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -2
Query: 595 DGNWGFDVSEREALLPAGTVDSNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTEN 416
DG + F +SE EA+ P G VD N + VYK++PQWEE + RY +K LADKYP EN
Sbjct: 135 DGKFDFKISELEAMFPDGMVDHNVDPVYKEMPQWEETLESCNNRYVNLVKTLADKYPCEN 194
Query: 415 LLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPIYQKDHTFTSGDFDLLTQSGQTG 236
LL VTH EGV+ TF K+ A + + +C VE +R I + GDF+++T GQ G
Sbjct: 195 LLLVTHREGVSFTYATFYKE-ATHRLDFCACVELQRQISSSE----VGDFEVVTSHGQDG 249
Query: 235 VTY 227
+ Y
Sbjct: 250 IMY 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,315,781
Number of Sequences: 1393205
Number of extensions: 10870174
Number of successful extensions: 28426
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28418
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
