Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003230A_C01 KMC003230A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_031490.1| apoptosis inhibitor 1 [Mus musculus] gi|2497237... 34 0.70
gb|AAH11338.1| Similar to baculoviral IAP repeat-containing 2 [M... 34 0.70
ref|NP_223442.1| putative [Helicobacter pylori J99] gi|7464818|p... 33 2.0
gb|AAF68254.1|AF206526_2 seroreactive antigen BMN1-17B [Babesia ... 33 2.0
ref|NP_055402.1| SRY (sex determining region Y)-box 8 [Homo sapi... 32 2.7
>ref|NP_031490.1| apoptosis inhibitor 1 [Mus musculus]
gi|2497237|sp|O08863|BIR2_MOUSE Baculoviral IAP
repeat-containing protein 2 (Inhibitor of apoptosis
protein 1) (MIAP1) (MIAP-1) gi|2062674|gb|AAC53531.1|
inhibitor of apoptosis protein 1 [Mus musculus]
Length = 600
Score = 34.3 bits (77), Expect = 0.70
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ASSRPSTPTTPRT--PLSFASNDPSFIMSGTYSAF 351
AS RPS P+T + PLSFAS++ + SG+YS+F
Sbjct: 105 ASPRPSLPSTAMSTMPLSFASSENTGYFSGSYSSF 139
>gb|AAH11338.1| Similar to baculoviral IAP repeat-containing 2 [Mus musculus]
Length = 374
Score = 34.3 bits (77), Expect = 0.70
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -2
Query: 449 ASSRPSTPTTPRT--PLSFASNDPSFIMSGTYSAF 351
AS RPS P+T + PLSFAS++ + SG+YS+F
Sbjct: 105 ASPRPSLPSTAMSTMPLSFASSENTGYFSGSYSSF 139
>ref|NP_223442.1| putative [Helicobacter pylori J99] gi|7464818|pir||D71897
hypothetical protein jhp0724 - Helicobacter pylori
(strain J99) gi|4155280|gb|AAD06298.1| putative
[Helicobacter pylori J99]
Length = 410
Score = 32.7 bits (73), Expect = 2.0
Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 10/161 (6%)
Frame = -3
Query: 454 GWHHQDQAHLQLQGL----LFLLLAMILPLSCLEPILLSLLIVTSLFESNNN*HVWIIFS 287
GW Q+ L LF++L +I+ ++ L I+ SLL+V N + ++FS
Sbjct: 257 GWWQQNGNFFSAMELEKRALFIVLMLIILMASLN-IISSLLMVVM----NRRKEIALLFS 311
Query: 286 FTRIKSKTQKLLIKAFFLKMILPSESIAKGLPNMHLV*LQILIYISMYLILECFIR---- 119
+ + QK F+L I+ + G+ +L +ISMYL+ I
Sbjct: 312 MGSSQKEIQKTF---FYLGNIIGLGGVILGV---------VLAFISMYLLSVFPIISLPA 359
Query: 118 --YYSQFVLIDLILCCFIQLVITSLRYIISSSYLCTKKDSS 2
Y + +DL L F +I S+ + SSY +KK S+
Sbjct: 360 DVYGINTLPLDLSLMDFTLTLIGSVIIVALSSYYPSKKASA 400
>gb|AAF68254.1|AF206526_2 seroreactive antigen BMN1-17B [Babesia microti]
Length = 206
Score = 32.7 bits (73), Expect = 2.0
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 5/63 (7%)
Frame = -3
Query: 247 KAFFLKMILPSESIAKGLPNMHLV*LQILIYISMYLILEC--FIRYYSQ---FVLIDLIL 83
K FF + L LP L+ + +L ++S+ L C IR+YS F+LID ++
Sbjct: 7 KVFFFQRCLSIMRFYSSLPTFILIEIAMLFFMSVTCFLRCLSIIRFYSSISTFILIDFVM 66
Query: 82 CCF 74
F
Sbjct: 67 PFF 69
>ref|NP_055402.1| SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 520
Score = 32.3 bits (72), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 473 GYGHHHGMASSR----PSTPTTPRTPLSFASNDPSFIMSG 366
G GHHHG + + P+ PTTP+T L A P + G
Sbjct: 283 GDGHHHGDHTGQTHGPPTPPTTPKTELQQAGAKPELKLEG 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,618,285
Number of Sequences: 1393205
Number of extensions: 6950236
Number of successful extensions: 22003
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 21115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21896
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
