Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003225A_C01 KMC003225A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, ... 77 2e-13
pir||T01623 hypothetical protein At2g18950 [imported] - Arabidop... 55 8e-07
gb|ZP_00107768.1| hypothetical protein [Nostoc punctiforme] 42 0.005
ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi... 40 0.015
ref|ZP_00070982.1| hypothetical protein [Trichodesmium erythraeu... 37 0.17
>ref|NP_179485.2| hypothetical protein; protein id: At2g18950.1, supported by cDNA:
gi_17104827, supported by cDNA: gi_17380873, supported
by cDNA: gi_20384918, supported by cDNA: gi_21281071
[Arabidopsis thaliana]
gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol
polyprenyltransferase [Arabidopsis thaliana]
gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis
thaliana] gi|20384919|gb|AAM10489.1| homogentisate
phytylprenyltransferase [Arabidopsis thaliana]
gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis
thaliana]
Length = 393
Score = 76.6 bits (187), Expect = 2e-13
Identities = 37/73 (50%), Positives = 51/73 (69%)
Frame = +1
Query: 343 SVKNCLEAFYMFRTPYAGIGRTISTISACLLAVNKLSDISPLFGTGLLQIMIPFLFMDIY 522
S ++ L+AFY F P+ IG +S +S LAV K+SDISPL TG+L+ ++ L M+IY
Sbjct: 92 SFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIY 151
Query: 523 IAGINQVFDVEID 561
I G+NQ+ DVEID
Sbjct: 152 IVGLNQLSDVEID 164
>pir||T01623 hypothetical protein At2g18950 [imported] - Arabidopsis thaliana
gi|3004556|gb|AAC09029.1| hypothetical protein
[Arabidopsis thaliana]
Length = 210
Score = 54.7 bits (130), Expect = 8e-07
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +1
Query: 421 SACLLAVNKLSDISPLFGTGLLQIMIPFLFMDIYIAGINQVFDVEID 561
S+ + AV K+SDISPL TG+L+ ++ L M+IYI G+NQ+ DVEID
Sbjct: 8 SSLVSAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEID 54
>gb|ZP_00107768.1| hypothetical protein [Nostoc punctiforme]
Length = 322
Score = 42.0 bits (97), Expect = 0.005
Identities = 26/73 (35%), Positives = 41/73 (55%), Gaps = 5/73 (6%)
Frame = +1
Query: 358 LEAFYMFRTPYAGIGRTISTISACLLAVNKLSDISPLFGTG-----LLQIMIPFLFMDIY 522
L AF+ F P+ IG ++S +S L+A+ ++ + LF T L I L ++Y
Sbjct: 22 LYAFWKFSRPHTIIGTSLSVLSLYLIAIAISNNTASLFTTPGSLSPLFGAWIACLCGNVY 81
Query: 523 IAGINQVFDVEID 561
I G+NQ+ DV+ID
Sbjct: 82 IVGLNQLEDVDID 94
>ref|NP_441094.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470486|pir||S74813
hypothetical protein slr1736 - Synechocystis sp. (strain
PCC 6803) gi|1652856|dbj|BAA17774.1|
ORF_ID:slr1736~unknown protein [Synechocystis sp. PCC
6803]
Length = 308
Score = 40.4 bits (93), Expect = 0.015
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 358 LEAFYMFRTPYAGIGRTISTISACLL-------AVNKLSDISPLFGTGLLQIMIPFLFMD 516
++AF+ F P+ IG T+S + LL +VN + + +FG L L +
Sbjct: 4 IQAFWRFSRPHTIIGTTLSVWAVYLLTILGDGNSVNSPASLDLVFGAWLA-----CLLGN 58
Query: 517 IYIAGINQVFDVEID 561
+YI G+NQ++DV+ID
Sbjct: 59 VYIVGLNQLWDVDID 73
>ref|ZP_00070982.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 349
Score = 37.0 bits (84), Expect = 0.17
Identities = 25/73 (34%), Positives = 41/73 (55%), Gaps = 5/73 (6%)
Frame = +1
Query: 358 LEAFYMFRTPYAGIGRTISTISACLLAVNKLSDISP----LFGTGLLQIM-IPFLFMDIY 522
L +F+ F P+ IG ++S ++ ++A+ S+ L+ LL I I L +IY
Sbjct: 24 LYSFWKFARPHTIIGTSLSVLALYIIAMGDRSNFFDKYFFLYSLILLLITWISCLCGNIY 83
Query: 523 IAGINQVFDVEID 561
I G+NQ+ D+EID
Sbjct: 84 IVGLNQLEDIEID 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,358,314
Number of Sequences: 1393205
Number of extensions: 10273656
Number of successful extensions: 25390
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25381
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
