Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003224A_C01 KMC003224A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567913.1| expressed protein; protein id: At4g33140.1, sup... 118 8e-26
pir||T05194 hypothetical protein F4I10.70 - Arabidopsis thaliana... 118 8e-26
gb|AAL59235.1|AF448416_16 unknown [Zea mays] 111 1e-23
gb|AAL35399.1| unknown [Zea mays] 111 1e-23
ref|NP_464153.1| similar to unknown protein [Listeria monocytoge... 34 2.0
>ref|NP_567913.1| expressed protein; protein id: At4g33140.1, supported by cDNA:
gi_15982924 [Arabidopsis thaliana]
gi|15982925|gb|AAL09809.1| AT4g33140/F4I10_70
[Arabidopsis thaliana] gi|22137262|gb|AAM91476.1|
AT4g33140/F4I10_70 [Arabidopsis thaliana]
Length = 353
Score = 118 bits (295), Expect = 8e-26
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = -1
Query: 651 SEICRSLNAKVLIDDNPRYAIECAEVGIRVLLFDYENSYPWCKTEFADQHPLVKRVKNWE 472
SEICRS A++LIDDNPRYA ECA +G++VLLFDYENSYPW KTE D+HPLV RV NWE
Sbjct: 280 SEICRSFGAEILIDDNPRYAEECANIGMKVLLFDYENSYPWSKTESVDRHPLVTRVHNWE 339
Query: 471 EVEQPLMSLVVS 436
EVEQ ++SL VS
Sbjct: 340 EVEQQILSLAVS 351
>pir||T05194 hypothetical protein F4I10.70 - Arabidopsis thaliana
gi|4455328|emb|CAB36788.1| hypothetical protein
[Arabidopsis thaliana] gi|7270262|emb|CAB80031.1|
hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 118 bits (295), Expect = 8e-26
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = -1
Query: 651 SEICRSLNAKVLIDDNPRYAIECAEVGIRVLLFDYENSYPWCKTEFADQHPLVKRVKNWE 472
SEICRS A++LIDDNPRYA ECA +G++VLLFDYENSYPW KTE D+HPLV RV NWE
Sbjct: 185 SEICRSFGAEILIDDNPRYAEECANIGMKVLLFDYENSYPWSKTESVDRHPLVTRVHNWE 244
Query: 471 EVEQPLMSLVVS 436
EVEQ ++SL VS
Sbjct: 245 EVEQQILSLAVS 256
>gb|AAL59235.1|AF448416_16 unknown [Zea mays]
Length = 327
Score = 111 bits (277), Expect = 1e-23
Identities = 51/71 (71%), Positives = 59/71 (82%)
Frame = -1
Query: 651 SEICRSLNAKVLIDDNPRYAIECAEVGIRVLLFDYENSYPWCKTEFADQHPLVKRVKNWE 472
SEICRS A+VLIDDNPRYA+ECA G+RVLLFDYE+SYPWCKT + HPLV +V NWE
Sbjct: 254 SEICRSFGAQVLIDDNPRYALECANDGMRVLLFDYESSYPWCKTGADELHPLVTKVHNWE 313
Query: 471 EVEQPLMSLVV 439
EVE+ L+S VV
Sbjct: 314 EVEEKLLSWVV 324
>gb|AAL35399.1| unknown [Zea mays]
Length = 331
Score = 111 bits (277), Expect = 1e-23
Identities = 51/71 (71%), Positives = 59/71 (82%)
Frame = -1
Query: 651 SEICRSLNAKVLIDDNPRYAIECAEVGIRVLLFDYENSYPWCKTEFADQHPLVKRVKNWE 472
SEICRS A+VLIDDNPRYA+ECA G+RVLLFDYE+SYPWCKT + HPLV +V NWE
Sbjct: 258 SEICRSFGAQVLIDDNPRYALECANDGMRVLLFDYESSYPWCKTGADELHPLVTKVHNWE 317
Query: 471 EVEQPLMSLVV 439
EVE+ L+S VV
Sbjct: 318 EVEEKLLSWVV 328
>ref|NP_464153.1| similar to unknown protein [Listeria monocytogenes EGD-e]
gi|25341439|pir||AB1153 hypothetical protein lmo0626
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16410015|emb|CAC98704.1| similar to unknown protein
[Listeria monocytogenes]
Length = 559
Score = 33.9 bits (76), Expect = 2.0
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = -3
Query: 373 LYFLSEIFSIHEKEIRSRQKKYNLADYVISPF*AVTKVVHYAKTCWLFT-MFYGVGSYNS 197
L FLS I + I LA YVI P + V+ K W+ +F + +N
Sbjct: 251 LSFLSSIRLSFKNFIFGHTHDQALAGYVILPILLLVLVLIIIKREWVKEKLFLWLFGFNL 310
Query: 196 RILFWVGLFGYMWIKCRRNWLCGSHFIIVSGAEFFGKVI*ILSPFQWFGL*FLIVLFLII 17
+ FW G + Y R W + + F + L PF ++GL L +++LI
Sbjct: 311 FLSFWYGFWWY------RGWNVIKEHVEIMRTFNFSRFH-FLQPFLFYGLFALAIVYLIK 363
Query: 16 K 14
K
Sbjct: 364 K 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,616,534
Number of Sequences: 1393205
Number of extensions: 11430194
Number of successful extensions: 23663
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23651
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
