Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003223A_C01 KMC003223A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62809.1| unknown [Arabidopsis thaliana] 73 3e-12
ref|NP_568373.1| putative protein; protein id: At5g19380.1, supp... 73 3e-12
gb|AAM60923.1| unknown [Arabidopsis thaliana] 67 1e-10
gb|AAM13018.1| unknown protein [Arabidopsis thaliana] gi|2213652... 67 1e-10
ref|NP_196778.1| putative protein; protein id: At5g12170.1 [Arab... 67 1e-10
>gb|AAM62809.1| unknown [Arabidopsis thaliana]
Length = 447
Score = 72.8 bits (177), Expect = 3e-12
Identities = 30/51 (58%), Positives = 41/51 (79%)
Frame = -3
Query: 542 IYVFTLPLPYLAIASSLPTGFLAGXIILIMGLLIYTWTPSNGSSHSSLAAP 390
+Y FTLPLPYL +AS+LP GF+AG IIL++G+L+Y WTPS +S S + +P
Sbjct: 394 VYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWTPSTNTSDSIIPSP 444
>ref|NP_568373.1| putative protein; protein id: At5g19380.1, supported by cDNA:
158575. [Arabidopsis thaliana]
Length = 447
Score = 72.8 bits (177), Expect = 3e-12
Identities = 30/51 (58%), Positives = 41/51 (79%)
Frame = -3
Query: 542 IYVFTLPLPYLAIASSLPTGFLAGXIILIMGLLIYTWTPSNGSSHSSLAAP 390
+Y FTLPLPYL +AS+LP GF+AG IIL++G+L+Y WTPS +S S + +P
Sbjct: 394 VYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWTPSTNTSDSIIPSP 444
>gb|AAM60923.1| unknown [Arabidopsis thaliana]
Length = 452
Score = 67.4 bits (163), Expect = 1e-10
Identities = 27/53 (50%), Positives = 41/53 (76%), Gaps = 1/53 (1%)
Frame = -3
Query: 542 IYVFTLPLPYLAIASSLPTGFLAGXIILIMGLLIYTWTPSN-GSSHSSLAAPT 387
+++FT+PLPYL +ASSLP GF+ G IIL++G+++Y+WTP SSH+ P+
Sbjct: 396 VFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSHTDSVIPS 448
>gb|AAM13018.1| unknown protein [Arabidopsis thaliana] gi|22136522|gb|AAM91339.1|
unknown protein [Arabidopsis thaliana]
Length = 452
Score = 67.4 bits (163), Expect = 1e-10
Identities = 27/53 (50%), Positives = 41/53 (76%), Gaps = 1/53 (1%)
Frame = -3
Query: 542 IYVFTLPLPYLAIASSLPTGFLAGXIILIMGLLIYTWTPSN-GSSHSSLAAPT 387
+++FT+PLPYL +ASSLP GF+ G IIL++G+++Y+WTP SSH+ P+
Sbjct: 396 VFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSHTDSVIPS 448
>ref|NP_196778.1| putative protein; protein id: At5g12170.1 [Arabidopsis thaliana]
gi|9759384|dbj|BAB10035.1|
gene_id:MXC9.13~pir||T09909~similar to unknown protein
[Arabidopsis thaliana]
Length = 276
Score = 67.4 bits (163), Expect = 1e-10
Identities = 27/53 (50%), Positives = 41/53 (76%), Gaps = 1/53 (1%)
Frame = -3
Query: 542 IYVFTLPLPYLAIASSLPTGFLAGXIILIMGLLIYTWTPSN-GSSHSSLAAPT 387
+++FT+PLPYL +ASSLP GF+ G IIL++G+++Y+WTP SSH+ P+
Sbjct: 220 VFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSHTDSVIPS 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,419,120
Number of Sequences: 1393205
Number of extensions: 10042590
Number of successful extensions: 22025
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22020
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
