Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003221A_C01 KMC003221A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175727.2| unknown protein; protein id: At1g53190.1, suppo... 149 3e-35
gb|AAM20734.1| unknown protein [Arabidopsis thaliana] 149 3e-35
ref|NP_566498.1| RING zinc finger protein, putative; protein id:... 148 5e-35
dbj|BAA97070.1| RING-finger protein (C-terminal)-like [Arabidops... 148 5e-35
pir||F96572 protein F12M16.10 [imported] - Arabidopsis thaliana ... 139 2e-32
>ref|NP_175727.2| unknown protein; protein id: At1g53190.1, supported by cDNA:
gi_20466833 [Arabidopsis thaliana]
Length = 494
Score = 149 bits (376), Expect = 3e-35
Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 4/115 (3%)
Frame = -1
Query: 605 HRDMRLDIEDMSYEDLLALGERIGNVSTGLSEEAISNQLKTKTYLAHATSVNEEEAASN- 429
HRDMRLDIE+MSYE+LLAL ERIG V+TGL EE + N LKT+T + +N E+ +S+
Sbjct: 377 HRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNHLKTRT----CSGINFEKESSSP 432
Query: 428 ---DQETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNVCPICKSEAL 273
D ET+ C ICQ+ FKN+E+I L C HEYHAECL KWL+VKNVCPICKSEAL
Sbjct: 433 RTKDLETEPCTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEAL 487
>gb|AAM20734.1| unknown protein [Arabidopsis thaliana]
Length = 494
Score = 149 bits (376), Expect = 3e-35
Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 4/115 (3%)
Frame = -1
Query: 605 HRDMRLDIEDMSYEDLLALGERIGNVSTGLSEEAISNQLKTKTYLAHATSVNEEEAASN- 429
HRDMRLDIE+MSYE+LLAL ERIG V+TGL EE + N LKT+T + +N E+ +S+
Sbjct: 377 HRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNHLKTRT----CSGINFEKESSSP 432
Query: 428 ---DQETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNVCPICKSEAL 273
D ET+ C ICQ+ FKN+E+I L C HEYHAECL KWL+VKNVCPICKSEAL
Sbjct: 433 RTKDLETEPCTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEAL 487
>ref|NP_566498.1| RING zinc finger protein, putative; protein id: At3g15070.1,
supported by cDNA: gi_14326492 [Arabidopsis thaliana]
gi|14326493|gb|AAK60292.1|AF385699_1 AT3g15070/K15M2_22
[Arabidopsis thaliana] gi|23506055|gb|AAN28887.1|
At3g15070/K15M2_22 [Arabidopsis thaliana]
Length = 486
Score = 148 bits (374), Expect = 5e-35
Identities = 69/111 (62%), Positives = 86/111 (77%)
Frame = -1
Query: 605 HRDMRLDIEDMSYEDLLALGERIGNVSTGLSEEAISNQLKTKTYLAHATSVNEEEAASND 426
H+DMRLDIEDMSYE+LLAL ++IG V TGLS E + LK +T +T +N EE S D
Sbjct: 367 HQDMRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRT----STRINLEEGPSTD 422
Query: 425 QETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNVCPICKSEAL 273
ETDSC ICQ+ +KN+++I L C H+YHAECL+KWL++KNVCPICKSEAL
Sbjct: 423 LETDSCTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPICKSEAL 473
>dbj|BAA97070.1| RING-finger protein (C-terminal)-like [Arabidopsis thaliana]
Length = 523
Score = 148 bits (374), Expect = 5e-35
Identities = 69/111 (62%), Positives = 86/111 (77%)
Frame = -1
Query: 605 HRDMRLDIEDMSYEDLLALGERIGNVSTGLSEEAISNQLKTKTYLAHATSVNEEEAASND 426
H+DMRLDIEDMSYE+LLAL ++IG V TGLS E + LK +T +T +N EE S D
Sbjct: 404 HQDMRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRT----STRINLEEGPSTD 459
Query: 425 QETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNVCPICKSEAL 273
ETDSC ICQ+ +KN+++I L C H+YHAECL+KWL++KNVCPICKSEAL
Sbjct: 460 LETDSCTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPICKSEAL 510
>pir||F96572 protein F12M16.10 [imported] - Arabidopsis thaliana
gi|7769853|gb|AAF69531.1|AC008007_6 F12M16.10
[Arabidopsis thaliana]
Length = 524
Score = 139 bits (351), Expect = 2e-32
Identities = 73/129 (56%), Positives = 88/129 (67%), Gaps = 18/129 (13%)
Frame = -1
Query: 605 HRDMRLDIEDMSYE--------------DLLALGERIGNVSTGLSEEAISNQLKTKTYLA 468
HRDMRLDIE+MSYE +LLAL ERIG V+TGL EE + N LKT+T
Sbjct: 393 HRDMRLDIEEMSYELGFCLSDLSLGFEQELLALSERIGTVNTGLPEEDVKNHLKTRT--- 449
Query: 467 HATSVNEEEAASN----DQETDSCMICQDEFKNQEEIGILRCEHEYHAECLRKWLLVKNV 300
+ +N E+ +S+ D ET+ C ICQ+ FKN+E+I L C HEYHAECL KWL+VKNV
Sbjct: 450 -CSGINFEKESSSPRTKDLETEPCTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNV 508
Query: 299 CPICKSEAL 273
CPICKSEAL
Sbjct: 509 CPICKSEAL 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,320,033
Number of Sequences: 1393205
Number of extensions: 11989278
Number of successful extensions: 34276
Number of sequences better than 10.0: 1159
Number of HSP's better than 10.0 without gapping: 32403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34022
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
