Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003220A_C01 KMC003220A_c01
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179533.2| putative WD-40 repeat protein; protein id: At2g... 148 8e-35
pir||T01291 probable WD-40 repeat protein [imported] - Arabidops... 69 8e-11
>ref|NP_179533.2| putative WD-40 repeat protein; protein id: At2g19430.1, supported
by cDNA: gi_20466503 [Arabidopsis thaliana]
gi|20466504|gb|AAM20569.1| putative WD-40 repeat protein
[Arabidopsis thaliana] gi|22136402|gb|AAM91279.1|
putative WD-40 repeat protein [Arabidopsis thaliana]
Length = 367
Score = 148 bits (373), Expect = 8e-35
Identities = 70/96 (72%), Positives = 82/96 (84%)
Frame = -3
Query: 683 GRNISLWNLPASECVSKISTRASVQDMLFDNNQILTVGADPLLDRFDMNGAILSQIQCAP 504
G+N++LWNLPASECV I A VQD++FD QILTVGA+PLL RFD+NGA+LSQI CAP
Sbjct: 267 GKNLALWNLPASECVQTIPIPAHVQDVMFDEKQILTVGAEPLLRRFDLNGALLSQIHCAP 326
Query: 503 PSAFSISLNPAGVMAVGGYGCLVDVISPFGSHMCTF 396
S FSISL+PAGV+AVGGYG +VDVIS FGSH+CTF
Sbjct: 327 CSVFSISLHPAGVVAVGGYGGIVDVISQFGSHLCTF 362
>pir||T01291 probable WD-40 repeat protein [imported] - Arabidopsis thaliana
gi|4191773|gb|AAD10142.1| putative WD-40 repeat protein
[Arabidopsis thaliana] gi|20197012|gb|AAM14874.1|
putative WD-40 repeat protein [Arabidopsis thaliana]
Length = 328
Score = 68.6 bits (166), Expect = 8e-11
Identities = 39/96 (40%), Positives = 47/96 (48%)
Frame = -3
Query: 683 GRNISLWNLPASECVSKISTRASVQDMLFDNNQILTVGADPLLDRFDMNGAILSQIQCAP 504
G+N++LWNLPASECV I A VQD++FD Q
Sbjct: 267 GKNLALWNLPASECVQTIPIPAHVQDVMFDEKQ--------------------------- 299
Query: 503 PSAFSISLNPAGVMAVGGYGCLVDVISPFGSHMCTF 396
V+AVGGYG +VDVIS FGSH+CTF
Sbjct: 300 ------------VVAVGGYGGIVDVISQFGSHLCTF 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,717,206
Number of Sequences: 1393205
Number of extensions: 11843950
Number of successful extensions: 23980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23976
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
