Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003217A_C01 KMC003217A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10211.1| hypothetical protein [Cicer arietinum] 110 9e-24
gb|AAM61025.1| unknown [Arabidopsis thaliana] 88 4e-17
ref|NP_566651.1| expressed protein; protein id: At3g19910.1, sup... 88 4e-17
ref|NP_190302.1| zinc-finger protein-like protein; protein id: A... 66 2e-10
ref|NP_566498.1| RING zinc finger protein, putative; protein id:... 62 3e-09
>emb|CAC10211.1| hypothetical protein [Cicer arietinum]
Length = 233
Score = 110 bits (274), Expect = 9e-24
Identities = 48/61 (78%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
Frame = -1
Query: 459 CLQS-STRPGNDQHGSHDSCVICRVDYEDDESLTVLSCQHLYHPECINHWLKIKQVCPVC 283
CL S + + G+DQHGS+DSCVICRVDYEDDESLTVLSC+HLYHPECIN+WLKI +VCPVC
Sbjct: 162 CLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVC 221
Query: 282 T 280
+
Sbjct: 222 S 222
>gb|AAM61025.1| unknown [Arabidopsis thaliana]
Length = 340
Score = 88.2 bits (217), Expect = 4e-17
Identities = 34/54 (62%), Positives = 47/54 (86%)
Frame = -1
Query: 441 RPGNDQHGSHDSCVICRVDYEDDESLTVLSCQHLYHPECINHWLKIKQVCPVCT 280
+ G++Q+G+++SCVICR+DYEDDE L +L C+H YH ECIN+WLKI +VCPVC+
Sbjct: 276 KEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCS 329
>ref|NP_566651.1| expressed protein; protein id: At3g19910.1, supported by cDNA:
108568., supported by cDNA: gi_15010577, supported by
cDNA: gi_15028362, supported by cDNA: gi_19310706
[Arabidopsis thaliana] gi|11994203|dbj|BAB01306.1|
gene_id:MPN9.16~unknown protein [Arabidopsis thaliana]
gi|15010578|gb|AAK73948.1| AT3g19910/MPN9_15
[Arabidopsis thaliana] gi|15028363|gb|AAK76658.1|
unknown protein [Arabidopsis thaliana]
gi|19310707|gb|AAL85084.1| unknown protein [Arabidopsis
thaliana]
Length = 340
Score = 88.2 bits (217), Expect = 4e-17
Identities = 34/54 (62%), Positives = 47/54 (86%)
Frame = -1
Query: 441 RPGNDQHGSHDSCVICRVDYEDDESLTVLSCQHLYHPECINHWLKIKQVCPVCT 280
+ G++Q+G+++SCVICR+DYEDDE L +L C+H YH ECIN+WLKI +VCPVC+
Sbjct: 276 KEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCS 329
>ref|NP_190302.1| zinc-finger protein-like protein; protein id: At3g47180.1
[Arabidopsis thaliana] gi|11358939|pir||T45654
zinc-finger-like protein - Arabidopsis thaliana
gi|6522599|emb|CAB61964.1| zinc-finger-like protein
[Arabidopsis thaliana]
Length = 210
Score = 65.9 bits (159), Expect = 2e-10
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = -1
Query: 459 CLQSSTRPGNDQHGSHDSCVICRVDYEDDESLTVLS-CQHLYHPECINHWLKIKQVCPVC 283
CL +ST + D CV+C++++E+ ESL VL C H YH ECI WL+ K++CP+C
Sbjct: 144 CLNASTYVFSHNKNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPIC 203
>ref|NP_566498.1| RING zinc finger protein, putative; protein id: At3g15070.1,
supported by cDNA: gi_14326492 [Arabidopsis thaliana]
gi|14326493|gb|AAK60292.1|AF385699_1 AT3g15070/K15M2_22
[Arabidopsis thaliana] gi|23506055|gb|AAN28887.1|
At3g15070/K15M2_22 [Arabidopsis thaliana]
Length = 486
Score = 62.0 bits (149), Expect = 3e-09
Identities = 21/43 (48%), Positives = 30/43 (68%)
Frame = -1
Query: 411 DSCVICRVDYEDDESLTVLSCQHLYHPECINHWLKIKQVCPVC 283
DSC IC+ +Y++++ + L C H YH EC+ WL IK VCP+C
Sbjct: 426 DSCTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPIC 468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,116,541
Number of Sequences: 1393205
Number of extensions: 7979071
Number of successful extensions: 16700
Number of sequences better than 10.0: 1108
Number of HSP's better than 10.0 without gapping: 16267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16641
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
