Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003213A_C01 KMC003213A_c01
(445 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_113352.1| hypothetical protein [Guillardia theta] gi|2539... 32 1.4
ref|NP_704070.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.0
gb|EAA16521.1| 235 kDa rhoptry protein [Plasmodium yoelii yoelii] 31 3.0
ref|NP_493984.1| Predicted CDS, putative plasma membrane membran... 31 4.0
ref|XP_143605.1| similar to Interferon-induced guanylate-binding... 31 4.0
>ref|NP_113352.1| hypothetical protein [Guillardia theta] gi|25396799|pir||E90097
hypothetical protein orf1019 [imported] - Guillardia
theta nucleomorph gi|13794533|gb|AAK39908.1|AF165818_116
hypothetical protein [Guillardia theta]
Length = 1019
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/70 (31%), Positives = 31/70 (43%)
Frame = +2
Query: 194 IFTKTKLFAKRYKSNSLLSSYVLYQPHQLLIPSALHLIYLVLNQTCRKR*FPGCWKEQSS 373
IF K K + K +S L SY + L I ++HL Y +LN R F C+ Q +
Sbjct: 613 IFIKIKQTYNKIKFHSSLDSYSKFARENLSITYSIHLCYFILNNQKFNRNFK-CYINQFN 671
Query: 374 CAKNYFTQKY 403
+ KY
Sbjct: 672 STITHKNYKY 681
>ref|NP_704070.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498808|emb|CAD50885.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 357
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 7 FPYKQCVIDEVCQH*LTEDIYISRYWTCIWYITEMSKVLGL*VTTAYYII 156
+ + C ID++ + L+E+ +IS YW I + MSK T ++Y++
Sbjct: 169 YTLRTCKIDKLTNYILSENTFISLYWAIINFNVFMSK-----YTDSFYVV 213
>gb|EAA16521.1| 235 kDa rhoptry protein [Plasmodium yoelii yoelii]
Length = 2740
Score = 31.2 bits (69), Expect = 3.0
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Frame = +3
Query: 108 NVKGPR-TISYYCI-LHYYIEYDTYCGRHYTFSQKPSYLLR--------DTNQIVSFLPM 257
NV GP + Y+ + L++Y E T+ Y+ ++KP + R D N I+ +
Sbjct: 151 NVSGPNENLKYFYVKLYFYQELRTFLNNIYSNAKKPVNIPRSTPLQIDNDINLIIKECEL 210
Query: 258 CYTNRTNSLSLLH 296
TN N +S LH
Sbjct: 211 QKTNLINEMSKLH 223
>ref|NP_493984.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 5 transmembrane domains, nematode
specific [Caenorhabditis elegans]
Length = 385
Score = 30.8 bits (68), Expect = 4.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 45 TLID*RYIYIPLLDLHLVYHRNVKGPRTISYYCILHYYIEY 167
T++D + IP + +Y N+K + YY L+Y ++Y
Sbjct: 83 TVLDFALVRIPSTSIATIYFLNMKSDSIVRYYIALYYCLDY 123
>ref|XP_143605.1| similar to Interferon-induced guanylate-binding protein 1 (Guanine
nucleotide-binding protein 1) [Mus musculus]
Length = 605
Score = 30.8 bits (68), Expect = 4.0
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 196 FHKNQVIC*EIQIK*SPFFLCAIPTAPTPYPFCTSPHLFSPE-PDLQETMISWLLEGTEF 372
FH +Q + ++ + + +P P P P TSP + D + SWL+ G
Sbjct: 15 FHCDQDVVTKVSVPSGTKEIAQLPLTPIPNPLITSPKKYPLNCGDQRNGHKSWLMHGLLM 74
Query: 373 MRQKLFHTKI 402
+ Q L K+
Sbjct: 75 VHQPLMEAKL 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,229,712
Number of Sequences: 1393205
Number of extensions: 8148194
Number of successful extensions: 17221
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17215
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
