Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003211A_C01 KMC003211A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA17087.1| syntaxin binding protein 1 [Plasmodium yoelii yoe... 36 0.24
gb|AAM63538.1| putative taste receptor T2R51 [Homo sapiens] 32 3.5
ref|NP_795371.1| taste receptor, type 2, member 50 [Homo sapiens... 32 3.5
ref|NP_762250.1| FOG: GGDEF domain [Vibrio vulnificus CMCP6] gi|... 32 3.5
gb|AAF44798.1|AE003406_3 hypothetical protein [Drosophila melano... 32 5.9
>gb|EAA17087.1| syntaxin binding protein 1 [Plasmodium yoelii yoelii]
Length = 640
Score = 36.2 bits (82), Expect = 0.24
Identities = 20/67 (29%), Positives = 38/67 (55%), Gaps = 1/67 (1%)
Frame = -2
Query: 452 ISRRKTWEFQKEEVAADIEMVENKKSLAAMMFPLMTTPEFRLINELDGMI-VDVHQYSTL 276
+SR WE++K+ + + E + KK + +F +T PE ++I +L I VD++ T
Sbjct: 564 VSRGTVWEYKKDIIKKETENHKKKKKIIIFIFGGITFPEIKIIYQLSKQINVDLYLGGTS 623
Query: 275 VMGTPQS 255
++ TP +
Sbjct: 624 IL-TPNT 629
>gb|AAM63538.1| putative taste receptor T2R51 [Homo sapiens]
Length = 299
Score = 32.3 bits (72), Expect = 3.5
Identities = 16/49 (32%), Positives = 29/49 (58%)
Frame = -1
Query: 189 LLVVAPSFYVLKAAIRSWN*NQLTTHFGLFLNADFYYFLFMVISHKCNI 43
L V+ P+FY ++ I S+N +T HF ++L A+ F + I++ N+
Sbjct: 68 LTVLNPAFYSVELRITSYNAWVVTNHFSMWLAANLSIFYLLKIANFSNL 116
>ref|NP_795371.1| taste receptor, type 2, member 50 [Homo sapiens]
gi|20336527|gb|AAM19326.1|AF494235_1 candidate taste
receptor TAS2R50 [Homo sapiens]
Length = 299
Score = 32.3 bits (72), Expect = 3.5
Identities = 16/49 (32%), Positives = 29/49 (58%)
Frame = -1
Query: 189 LLVVAPSFYVLKAAIRSWN*NQLTTHFGLFLNADFYYFLFMVISHKCNI 43
L V+ P+FY ++ I S+N +T HF ++L A+ F + I++ N+
Sbjct: 68 LTVLNPAFYSVELRITSYNAWVVTNHFSMWLAANLSIFYLLKIANFSNL 116
>ref|NP_762250.1| FOG: GGDEF domain [Vibrio vulnificus CMCP6]
gi|27358290|gb|AAO07240.1|AE016809_2 FOG: GGDEF domain
[Vibrio vulnificus CMCP6]
Length = 662
Score = 32.3 bits (72), Expect = 3.5
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = -2
Query: 464 STSKISRRKTWEFQKEEVAADIEMVENKKSLAAMMFPLMTTPEFRLINELDGMIVDVHQY 285
ST +S+R+ F ++V +IE N++ +AA +F + + ++ + +G+I +
Sbjct: 333 STRILSKRRATLFSIQDVT-EIETALNRQRIAAGVFE--NSQDGLVVLDHNGLITMTNPA 389
Query: 284 STLVMGTPQSFLVGK 240
T ++G PQ L+GK
Sbjct: 390 VTRMLGYPQEILIGK 404
>gb|AAF44798.1|AE003406_3 hypothetical protein [Drosophila melanogaster]
Length = 398
Score = 31.6 bits (70), Expect = 5.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 343 VVIRGNIMAARDFLFSTISMSA-ATSSFWNSHVFLLDILEVLLHLSQSRSSGNEHRSQKN 519
++I NI+ + + + + SA A S WN H +D V + +S G HR+ N
Sbjct: 299 ILIYLNILGVQQHMMARLQYSAEAKSCIWNLHGNGIDEYRVTCRFAGCQSRGKVHRTNSN 358
Query: 520 PP 525
P
Sbjct: 359 AP 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,598,492
Number of Sequences: 1393205
Number of extensions: 9771351
Number of successful extensions: 24143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24137
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
