Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003210A_C01 KMC003210A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564656.1| membrane protein common family; protein id: At1... 83 1e-24
ref|NP_566435.1| membrane protein common family; protein id: At3... 77 2e-22
pir||G86298 protein F3O9.16 [imported] - Arabidopsis thaliana gi... 71 8e-21
ref|NP_173086.1| membrane protein common family; protein id: At1... 71 8e-21
ref|NP_565210.1| membrane protein common family; protein id: At1... 72 1e-20
>ref|NP_564656.1| membrane protein common family; protein id: At1g54320.1, supported
by cDNA: gi_15010741, supported by cDNA: gi_15450728,
supported by cDNA: gi_17386111 [Arabidopsis thaliana]
gi|25347305|pir||G96584 hypothetical protein F20D21.14
[imported] - Arabidopsis thaliana
gi|4585976|gb|AAD25612.1|AC005287_14 Unknown protein
[Arabidopsis thaliana] gi|15010742|gb|AAK74030.1|
At1g54320/F20D21_50 [Arabidopsis thaliana]
gi|15450729|gb|AAK96636.1| At1g54320/F20D21_50
[Arabidopsis thaliana]
gi|17386112|gb|AAL38602.1|AF446869_1 At1g54320/F20D21_50
[Arabidopsis thaliana]
Length = 349
Score = 82.8 bits (203), Expect(2) = 1e-24
Identities = 37/51 (72%), Positives = 43/51 (83%)
Frame = -1
Query: 439 LVGRMTSLRLAYLTLGGLCFFLALAFTLVYFVKPRPLGDPSYLSWNRNPGG 287
L G+ L +AYLT+GG+CF LALAFT++Y VKPR LGDPSYLSWNRNPGG
Sbjct: 298 LGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348
Score = 51.2 bits (121), Expect(2) = 1e-24
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 485 SFNGKKKLVLSTTSWLGGKNDFL 417
SFNGKKKLVLSTTSWLGGKNDFL
Sbjct: 283 SFNGKKKLVLSTTSWLGGKNDFL 305
>ref|NP_566435.1| membrane protein common family; protein id: At3g12740.1, supported
by cDNA: 37019., supported by cDNA: gi_15028094,
supported by cDNA: gi_15294235, supported by cDNA:
gi_20258910 [Arabidopsis thaliana]
gi|11994416|dbj|BAB02418.1|
gb|AAD25612.1~gene_id:MBK21.12~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|15028095|gb|AAK76578.1| unknown protein [Arabidopsis
thaliana] gi|15294236|gb|AAK95295.1|AF410309_1
AT3g12740/MBK21_10 [Arabidopsis thaliana]
gi|20258911|gb|AAM14149.1| unknown protein [Arabidopsis
thaliana] gi|21593199|gb|AAM65148.1| unknown
[Arabidopsis thaliana]
Length = 350
Score = 77.4 bits (189), Expect(2) = 2e-22
Identities = 35/51 (68%), Positives = 42/51 (81%)
Frame = -1
Query: 439 LVGRMTSLRLAYLTLGGLCFFLALAFTLVYFVKPRPLGDPSYLSWNRNPGG 287
L G+ L +AYLT+GG+CF LALAFT++Y VKPR LGDP+YLSWNR PGG
Sbjct: 299 LGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349
Score = 49.3 bits (116), Expect(2) = 2e-22
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = -3
Query: 485 SFNGKKKLVLSTTSWLGGKNDFL 417
SF+GKKKLVLSTTSWLGGKNDFL
Sbjct: 284 SFSGKKKLVLSTTSWLGGKNDFL 306
>pir||G86298 protein F3O9.16 [imported] - Arabidopsis thaliana
gi|4966357|gb|AAD34688.1|AC006341_16 >F3O9.16
[Arabidopsis thaliana]
Length = 353
Score = 71.2 bits (173), Expect(2) = 8e-21
Identities = 31/51 (60%), Positives = 40/51 (77%)
Frame = -1
Query: 439 LVGRMTSLRLAYLTLGGLCFFLALAFTLVYFVKPRPLGDPSYLSWNRNPGG 287
L GR L +AYLT+G +C FLA++F+++Y KPR LGDPSYLSWNR+ GG
Sbjct: 301 LGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 351
Score = 50.1 bits (118), Expect(2) = 8e-21
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = -3
Query: 485 SFNGKKKLVLSTTSWLGGKNDFL 417
SFNGKKKLVLSTTSWLGG+NDFL
Sbjct: 286 SFNGKKKLVLSTTSWLGGRNDFL 308
>ref|NP_173086.1| membrane protein common family; protein id: At1g16360.1
[Arabidopsis thaliana]
Length = 316
Score = 71.2 bits (173), Expect(2) = 8e-21
Identities = 31/51 (60%), Positives = 40/51 (77%)
Frame = -1
Query: 439 LVGRMTSLRLAYLTLGGLCFFLALAFTLVYFVKPRPLGDPSYLSWNRNPGG 287
L GR L +AYLT+G +C FLA++F+++Y KPR LGDPSYLSWNR+ GG
Sbjct: 264 LGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 314
Score = 50.1 bits (118), Expect(2) = 8e-21
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = -3
Query: 485 SFNGKKKLVLSTTSWLGGKNDFL 417
SFNGKKKLVLSTTSWLGG+NDFL
Sbjct: 249 SFNGKKKLVLSTTSWLGGRNDFL 271
>ref|NP_565210.1| membrane protein common family; protein id: At1g79450.1, supported
by cDNA: 94828. [Arabidopsis thaliana]
gi|21618040|gb|AAM67090.1| unknown [Arabidopsis
thaliana]
Length = 350
Score = 72.0 bits (175), Expect(2) = 1e-20
Identities = 32/51 (62%), Positives = 39/51 (75%)
Frame = -1
Query: 439 LVGRMTSLRLAYLTLGGLCFFLALAFTLVYFVKPRPLGDPSYLSWNRNPGG 287
L GR L +AYLT+G +C FLA+ F ++Y VKPR LGDPSYLSWNR+ GG
Sbjct: 298 LGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348
Score = 48.5 bits (114), Expect(2) = 1e-20
Identities = 21/23 (91%), Positives = 23/23 (99%)
Frame = -3
Query: 485 SFNGKKKLVLSTTSWLGGKNDFL 417
SFNG+KKLVLSTTSWLGG+NDFL
Sbjct: 283 SFNGQKKLVLSTTSWLGGRNDFL 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,104,557
Number of Sequences: 1393205
Number of extensions: 10267493
Number of successful extensions: 21824
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 21155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21817
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
