Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003207A_C01 KMC003207A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM47585.1| putative expressed protein [Sorghum bicolor] 180 9e-45
ref|NP_566244.1| expressed protein; protein id: At3g05010.1, sup... 175 3e-43
gb|AAG51409.1|AC009465_9 unknown protein; 15342-13483 [Arabidops... 167 1e-40
gb|AAM67148.1| unknown [Arabidopsis thaliana] 162 2e-39
ref|NP_198073.1| putative protein; protein id: At5g27210.1, supp... 162 2e-39
>gb|AAM47585.1| putative expressed protein [Sorghum bicolor]
Length = 271
Score = 180 bits (457), Expect = 9e-45
Identities = 77/116 (66%), Positives = 94/116 (80%)
Frame = -1
Query: 549 LWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAG 370
LWI+HKL+L YG I+F+H S+WR++LP +PA+YNYV M + + ++LF C L GAG
Sbjct: 156 LWILHKLVLTGVYGLIVFMHHSRWRDRLPAKPAYYNYVCAMLLLNGLSLFGCFLIASGAG 215
Query: 369 LGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE 202
G WLYNLT +CYHSLYLP LYVTFLADFFQEED LL+N YYSEMKDAGFFDA+W+
Sbjct: 216 FGLWLYNLTTVCYHSLYLPLLYVTFLADFFQEEDMLLENVYYSEMKDAGFFDADWD 271
>ref|NP_566244.1| expressed protein; protein id: At3g05010.1, supported by cDNA:
gi_15028250 [Arabidopsis thaliana]
gi|15028251|gb|AAK76714.1| unknown protein [Arabidopsis
thaliana]
Length = 300
Score = 175 bits (444), Expect = 3e-43
Identities = 76/116 (65%), Positives = 91/116 (77%)
Frame = -1
Query: 549 LWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAG 370
LW++HKLLLA YG I F++ SKWRE+LP RPAFY Y+ VM + ++LFAC L+ GA
Sbjct: 185 LWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACALTANGAH 244
Query: 369 LGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE 202
G WLY +T +CYH+ YLP LYVTFLADFFQEED L+N YYSEMKDAGFFDA+WE
Sbjct: 245 FGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDADWE 300
>gb|AAG51409.1|AC009465_9 unknown protein; 15342-13483 [Arabidopsis thaliana]
Length = 311
Score = 167 bits (422), Expect = 1e-40
Identities = 76/127 (59%), Positives = 91/127 (70%), Gaps = 11/127 (8%)
Frame = -1
Query: 549 LWIVHKLLLAAAYGFILFVHFSKWREKLP-----------PRPAFYNYVVVMFVFSAVTL 403
LW++HKLLLA YG I F++ SKWRE+LP RPAFY Y+ VM + ++L
Sbjct: 185 LWVIHKLLLAGIYGMIFFMYNSKWRERLPGEYIDHSYPPYARPAFYKYITVMLALNGLSL 244
Query: 402 FACGLSGIGAGLGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAG 223
FAC L+ GA G WLY +T +CYH+ YLP LYVTFLADFFQEED L+N YYSEMKDAG
Sbjct: 245 FACALTANGAHFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAG 304
Query: 222 FFDAEWE 202
FFDA+WE
Sbjct: 305 FFDADWE 311
>gb|AAM67148.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 162 bits (411), Expect = 2e-39
Identities = 69/116 (59%), Positives = 87/116 (74%)
Frame = -1
Query: 549 LWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAG 370
LWI+HKLLL YG + ++ S+WREKLP RPAFYNY+++MF ++ L A + A
Sbjct: 182 LWIIHKLLLTGVYGMVFLMYNSRWREKLPARPAFYNYIIIMFALYSLYLVASAFTANNAH 241
Query: 369 LGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE 202
G WLY + +CYH+LYLP LY+TFLADFFQEED L+N YYSEMKDAGFFD++WE
Sbjct: 242 FGFWLYGIMSVCYHALYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFDSDWE 297
>ref|NP_198073.1| putative protein; protein id: At5g27210.1, supported by cDNA:
96808., supported by cDNA: gi_14532471 [Arabidopsis
thaliana]
Length = 297
Score = 162 bits (411), Expect = 2e-39
Identities = 69/116 (59%), Positives = 87/116 (74%)
Frame = -1
Query: 549 LWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAG 370
LWI+HKLLL YG + ++ S+WREKLP RPAFYNY+++MF ++ L A + A
Sbjct: 182 LWIIHKLLLTGVYGMVFLMYNSRWREKLPARPAFYNYIIIMFALYSLYLVASAFTANNAH 241
Query: 369 LGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE 202
G WLY + +CYH+LYLP LY+TFLADFFQEED L+N YYSEMKDAGFFD++WE
Sbjct: 242 FGFWLYGIMSVCYHALYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFDSDWE 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,090,058
Number of Sequences: 1393205
Number of extensions: 9190706
Number of successful extensions: 25226
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25203
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
