Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003206A_C01 KMC003206A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42138.1| unknown protein [Arabidopsis thaliana] 89 4e-21
gb|AAA62274.1| ORF1 29 1.3
ref|NP_142722.1| hypothetical protein [Pyrococcus horikoshii] gi... 33 1.6
ref|ZP_00072104.1| hypothetical protein [Trichodesmium erythraeu... 32 3.6
gb|AAC78551.1| ferredoxin-dependent glutamate synthase precursor... 31 6.1
>dbj|BAC42138.1| unknown protein [Arabidopsis thaliana]
Length = 196
Score = 89.0 bits (219), Expect(2) = 4e-21
Identities = 41/57 (71%), Positives = 51/57 (88%)
Frame = -3
Query: 479 EGVEITHSNLEGARYMIYTPSDPLLFVALKDEDGILQIADDDLLEDPIVIDAIDQET 309
EGVEIT +L+G+ YM+YTPSDPLLFVA KD++G+LQIADD+LL+DP VI AID+ET
Sbjct: 119 EGVEITCFHLDGSHYMVYTPSDPLLFVAAKDQNGLLQIADDELLDDPAVISAIDEET 175
Score = 33.1 bits (74), Expect(2) = 4e-21
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -1
Query: 307 EFNALVEEEAALTESTMDER 248
EFNALVEEEAAL ES + ER
Sbjct: 176 EFNALVEEEAALLESLLGER 195
>gb|AAA62274.1| ORF1
Length = 146
Score = 29.3 bits (64), Expect(2) = 1.3
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = -3
Query: 242 WYILL*SCTCILLCTAPVLYDQFCKDRMCILIYFTFLSSQYLKIIFFY-*FYMYRH 78
WYILL C LL ++ FC L +F L +L + + Y F+++R+
Sbjct: 5 WYILLLFCFLFLLFVCVGMFYLFC---YSCLFFFVVLGCDFLLVFWLYSLFFLWRY 57
Score = 23.1 bits (48), Expect(2) = 1.3
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -1
Query: 106 FFINFICIGIFFVFVMLGISC 44
FF+ F +G FFVFV C
Sbjct: 97 FFMLFFVLGGFFVFVFFFCLC 117
>ref|NP_142722.1| hypothetical protein [Pyrococcus horikoshii] gi|7518819|pir||D71127
hypothetical protein PH0785 - Pyrococcus horikoshii
gi|3257195|dbj|BAA29878.1| 598aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 598
Score = 33.1 bits (74), Expect = 1.6
Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 210 NTGTALQ*NIPGYLSSMVDSVRAASSSTKALNSGL----LIYGVNDNRIFKQVIISNLQY 377
+TGT ++PGY S+ + + AL SG +IYG+N RIF+ + + L Y
Sbjct: 39 STGTVYFSHVPGYFSAQIIKYPPGYHALIALLSGFKGENIIYGMNSLRIFEILYLPALAY 98
Query: 378 PV 383
V
Sbjct: 99 LV 100
>ref|ZP_00072104.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 193
Score = 32.0 bits (71), Expect = 3.6
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = -3
Query: 449 EGARYMIYTPSDPLLFVALKDEDGILQIADDD 354
E +Y IYTP DP L A K ++G L++ ++
Sbjct: 140 EDRKYAIYTPLDPFLIPARKSDNGKLELLSEE 171
>gb|AAC78551.1| ferredoxin-dependent glutamate synthase precursor [Arabidopsis
thaliana]
Length = 1622
Score = 31.2 bits (69), Expect = 6.1
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 368 IADDDLLEDPIVIDAIDQE 312
+ DDD+L DP+VIDAI+ E
Sbjct: 1346 VLDDDILADPLVIDAIENE 1364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,711,003
Number of Sequences: 1393205
Number of extensions: 8130480
Number of successful extensions: 20523
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20168
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
