Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003201A_C01 KMC003201A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana] 142 4e-33
ref|NP_179987.2| putative chloroplast ribosomal protein L35; pro... 142 4e-33
sp|P23326|RK35_SPIOL 50S RIBOSOMAL PROTEIN L35, CHLOROPLAST PREC... 134 7e-31
emb|CAD24032.1| putative plastid ribosomal protein L35 [Zea mays... 129 2e-29
emb|CAD24038.1| putative plastid ribosomal protein L35 [Zea mays] 129 2e-29
>emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana]
Length = 140
Score = 142 bits (357), Expect = 4e-33
Identities = 73/94 (77%), Positives = 79/94 (83%), Gaps = 3/94 (3%)
Frame = -1
Query: 567 KLCTVTPPSSRSL---TIVGGKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNT 397
K+ TV P+S+ L T+ KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL KKN
Sbjct: 47 KISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNN 106
Query: 396 KRKLRLSKMHPVNRSDYDNVIGALPYLKVNRNAT 295
KRKLRLSKM VNRSDYDNVIGALPYLKVNR AT
Sbjct: 107 KRKLRLSKMTEVNRSDYDNVIGALPYLKVNRKAT 140
>ref|NP_179987.2| putative chloroplast ribosomal protein L35; protein id:
At2g24090.1, supported by cDNA: gi_17529001, supported
by cDNA: gi_20465444 [Arabidopsis thaliana]
gi|17529002|gb|AAL38711.1| putative chloroplast
ribosomal protein L35 [Arabidopsis thaliana]
gi|20465445|gb|AAM20182.1| putative chloroplast
ribosomal protein L35 [Arabidopsis thaliana]
Length = 145
Score = 142 bits (357), Expect = 4e-33
Identities = 73/94 (77%), Positives = 79/94 (83%), Gaps = 3/94 (3%)
Frame = -1
Query: 567 KLCTVTPPSSRSL---TIVGGKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNT 397
K+ TV P+S+ L T+ KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL KKN
Sbjct: 52 KISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNN 111
Query: 396 KRKLRLSKMHPVNRSDYDNVIGALPYLKVNRNAT 295
KRKLRLSKM VNRSDYDNVIGALPYLKVNR AT
Sbjct: 112 KRKLRLSKMTEVNRSDYDNVIGALPYLKVNRKAT 145
>sp|P23326|RK35_SPIOL 50S RIBOSOMAL PROTEIN L35, CHLOROPLAST PRECURSOR (CL35)
gi|81486|pir||A36107 ribosomal protein L35 precursor,
chloroplast - spinach gi|170139|gb|AAA34043.1| ribosomal
protein L35
Length = 159
Score = 134 bits (338), Expect = 7e-31
Identities = 68/80 (85%), Positives = 71/80 (88%)
Frame = -1
Query: 543 SSRSLTIVGGKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKMHP 364
SS S T+ KGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL KKNTKRK RLSK+
Sbjct: 78 SSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQ 137
Query: 363 VNRSDYDNVIGALPYLKVNR 304
V+RSDYDNVIGALPYLKVNR
Sbjct: 138 VDRSDYDNVIGALPYLKVNR 157
>emb|CAD24032.1| putative plastid ribosomal protein L35 [Zea mays]
gi|28411214|emb|CAD24037.1| putative plastid ribosomal
protein L35 [Zea mays]
Length = 143
Score = 129 bits (325), Expect = 2e-29
Identities = 66/85 (77%), Positives = 70/85 (81%)
Frame = -1
Query: 552 TPPSSRSLTIVGGKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSK 373
T +S + G KGYKMKTHKASAKRFRVTG+GKIVRR AGKQHLL KKNTKRK RLSK
Sbjct: 58 TSTTSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSK 117
Query: 372 MHPVNRSDYDNVIGALPYLKVNRNA 298
M VN+SDYDNV GALPYLKVNR A
Sbjct: 118 MVQVNKSDYDNVTGALPYLKVNRKA 142
>emb|CAD24038.1| putative plastid ribosomal protein L35 [Zea mays]
Length = 120
Score = 129 bits (325), Expect = 2e-29
Identities = 66/85 (77%), Positives = 70/85 (81%)
Frame = -1
Query: 552 TPPSSRSLTIVGGKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSK 373
T +S + G KGYKMKTHKASAKRFRVTG+GKIVRR AGKQHLL KKNTKRK RLSK
Sbjct: 35 TSTTSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSK 94
Query: 372 MHPVNRSDYDNVIGALPYLKVNRNA 298
M VN+SDYDNV GALPYLKVNR A
Sbjct: 95 MVQVNKSDYDNVTGALPYLKVNRKA 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,475,711
Number of Sequences: 1393205
Number of extensions: 9953068
Number of successful extensions: 25623
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 24912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25602
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
