Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003199A_C01 KMC003199A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67601.1|AC018929_23 putative cinnamoyl-CoA reductase [Oryz... 142 2e-33
ref|NP_565557.1| putative cinnamoyl CoA reductase; protein id: A... 127 1e-28
pir||C84630 probable cinnamoyl CoA reductase [imported] - Arabid... 127 1e-28
gb|AAM62641.1| cinnamoyl-CoA reductase-like protein [Arabidopsis... 125 3e-28
ref|NP_194776.1| cinnamoyl-CoA reductase - like protein; protein... 125 3e-28
>gb|AAL67601.1|AC018929_23 putative cinnamoyl-CoA reductase [Oryza sativa]
Length = 321
Score = 142 bits (359), Expect = 2e-33
Identities = 70/130 (53%), Positives = 94/130 (71%)
Frame = -1
Query: 585 LAEKTAWALAMDRGVNMVSINSGLVMSHDLSIKNPYLRGAAEMYEDGVFVTVDLEFLVDA 406
L+E+TAWALAMDRGV+MV+IN+GL+ L+ +PYL+GA +MY+ GV VTVD++FL DA
Sbjct: 183 LSERTAWALAMDRGVDMVAINAGLLTGPGLTAGHPYLKGAPDMYDHGVLVTVDVDFLADA 242
Query: 405 HICVYEDVSSYGRYLCFNHIINTQDDAVQLARKLTPAASSSMPQSDDHGSQSFIEQRISN 226
HI YE ++YGRYLCFN+ I +DA +LA+ L +A++ P + I QRI
Sbjct: 243 HIAAYECPTAYGRYLCFNNAICRPEDAAKLAQMLISSAAAPRPPAPPSDELKVIPQRIHT 302
Query: 225 KKLNKLMVDF 196
KKLNKLM+DF
Sbjct: 303 KKLNKLMLDF 312
>ref|NP_565557.1| putative cinnamoyl CoA reductase; protein id: At2g23910.1,
supported by cDNA: 14133. [Arabidopsis thaliana]
gi|20197297|gb|AAC63661.2| putative cinnamoyl CoA
reductase [Arabidopsis thaliana]
Length = 304
Score = 127 bits (319), Expect = 1e-28
Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 5/131 (3%)
Frame = -1
Query: 582 AEKTAWALAMDRGVNMVSINSGLVMSHDLSIKNP-----YLRGAAEMYEDGVFVTVDLEF 418
+EK AWALAMDR VNMVS+N GL++ ++ NP YL+GAA+MYE+GV VD+EF
Sbjct: 168 SEKAAWALAMDRMVNMVSVNPGLIVGPSVAQHNPRPTMSYLKGAAQMYENGVLAYVDVEF 227
Query: 417 LVDAHICVYEDVSSYGRYLCFNHIINTQDDAVQLARKLTPAASSSMPQSDDHGSQSFIEQ 238
+ D HI +ED S+ GRY CFN I+NT+++A++L + L+P + E+
Sbjct: 228 VADVHIRAFEDTSACGRYFCFNQIVNTEEEALKLVQTLSPLIPMPPRHEKEMQGSEVYEE 287
Query: 237 RISNKKLNKLM 205
R+ NKKLNKL+
Sbjct: 288 RLRNKKLNKLV 298
>pir||C84630 probable cinnamoyl CoA reductase [imported] - Arabidopsis thaliana
Length = 303
Score = 127 bits (319), Expect = 1e-28
Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 5/131 (3%)
Frame = -1
Query: 582 AEKTAWALAMDRGVNMVSINSGLVMSHDLSIKNP-----YLRGAAEMYEDGVFVTVDLEF 418
+EK AWALAMDR VNMVS+N GL++ ++ NP YL+GAA+MYE+GV VD+EF
Sbjct: 167 SEKAAWALAMDRMVNMVSVNPGLIVGPSVAQHNPRPTMSYLKGAAQMYENGVLAYVDVEF 226
Query: 417 LVDAHICVYEDVSSYGRYLCFNHIINTQDDAVQLARKLTPAASSSMPQSDDHGSQSFIEQ 238
+ D HI +ED S+ GRY CFN I+NT+++A++L + L+P + E+
Sbjct: 227 VADVHIRAFEDTSACGRYFCFNQIVNTEEEALKLVQTLSPLIPMPPRHEKEMQGSEVYEE 286
Query: 237 RISNKKLNKLM 205
R+ NKKLNKL+
Sbjct: 287 RLRNKKLNKLV 297
>gb|AAM62641.1| cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana]
Length = 303
Score = 125 bits (315), Expect = 3e-28
Identities = 67/135 (49%), Positives = 95/135 (69%), Gaps = 8/135 (5%)
Frame = -1
Query: 585 LAEKTAWALAMDRGVNMVSINSGLVMSHDLSIKNP-----YLRGAAEMYEDGVFVTVDLE 421
L+EK AWALAMDR +NMVSIN GLV+ ++ N YL+GAA+MYE+GV VD++
Sbjct: 166 LSEKAAWALAMDRRLNMVSINPGLVVGPSVAQHNARPTMSYLKGAAQMYENGVLAYVDVK 225
Query: 420 FLVDAHICVYEDVSSYGRYLCFNHIINTQDDAVQLARKLTPAASSSMP---QSDDHGSQS 250
FL D HI +EDVS+ GRY CFN I+NT+++A++L L+P MP +++ HGS+
Sbjct: 226 FLADVHIRAFEDVSACGRYFCFNQIVNTEEEALKLVESLSPLI--PMPPRYENEMHGSEV 283
Query: 249 FIEQRISNKKLNKLM 205
+ E+R+ N KL+KL+
Sbjct: 284 Y-EERLRNNKLSKLV 297
>ref|NP_194776.1| cinnamoyl-CoA reductase - like protein; protein id: At4g30470.1,
supported by cDNA: 150515., supported by cDNA:
gi_14596196 [Arabidopsis thaliana]
gi|25407644|pir||D85356 cinnamoyl-CoA reductase-like
protein [imported] - Arabidopsis thaliana
gi|7269948|emb|CAB79765.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
gi|14596197|gb|AAK68826.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
gi|24899703|gb|AAN65066.1| cinnamoyl-CoA reductase-like
protein [Arabidopsis thaliana]
Length = 303
Score = 125 bits (315), Expect = 3e-28
Identities = 67/135 (49%), Positives = 95/135 (69%), Gaps = 8/135 (5%)
Frame = -1
Query: 585 LAEKTAWALAMDRGVNMVSINSGLVMSHDLSIKNP-----YLRGAAEMYEDGVFVTVDLE 421
L+EK AWALAMDR +NMVSIN GLV+ ++ N YL+GAA+MYE+GV VD++
Sbjct: 166 LSEKAAWALAMDRRLNMVSINPGLVVGPSVAQHNARPTMSYLKGAAQMYENGVLAYVDVK 225
Query: 420 FLVDAHICVYEDVSSYGRYLCFNHIINTQDDAVQLARKLTPAASSSMP---QSDDHGSQS 250
FL D HI +EDVS+ GRY CFN I+NT+++A++L L+P MP +++ HGS+
Sbjct: 226 FLADVHIRAFEDVSACGRYFCFNQIVNTEEEALKLVESLSPLI--PMPPRYENEMHGSEV 283
Query: 249 FIEQRISNKKLNKLM 205
+ E+R+ N KL+KL+
Sbjct: 284 Y-EERLRNNKLSKLV 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,972,393
Number of Sequences: 1393205
Number of extensions: 10437844
Number of successful extensions: 27406
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 25888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27275
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
