Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003198A_C01 KMC003198A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA85655.1| elicitor-responsive Dof protein ERDP [Pisum sati... 100 1e-20
ref|NP_565673.1| Dof zinc finger protein; protein id: At2g28510.... 64 2e-09
gb|AAM62856.1| putative DOF zinc finger protein [Arabidopsis tha... 64 2e-09
pir||G84685 probable DOF zinc finger protein [imported] - Arabid... 64 2e-09
ref|NP_190147.1| Dof zinc finger protein; protein id: At3g45610.... 40 0.017
>dbj|BAA85655.1| elicitor-responsive Dof protein ERDP [Pisum sativum]
Length = 283
Score = 100 bits (250), Expect = 1e-20
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 10/132 (7%)
Frame = -3
Query: 590 LDSLRSG-FLGTN---NNNVQNLYYG-YGNGDMGEVENG---VGVSGDMMLPYDQELSST 435
+D++RSG FLG NN+VQN+Y G YGNGD GEV +G GVS +MM YDQE+S
Sbjct: 166 MDAIRSGLFLGNGMHYNNSVQNMYGGGYGNGDNGEVNSGNNNCGVSEEMMFNYDQEMSHC 225
Query: 434 IATTQAVTVTTMKQELCSGREQNESKVLWGFPWQLNHGDHTHMGGELDSGRANWNG--LT 261
A MKQE Q+ES+V GFPWQ+N G GE++ RA+WN T
Sbjct: 226 NAAIN------MKQE------QSESRVFGGFPWQINGGIGNM--GEVEQARASWNNGFTT 271
Query: 260 PSWHGLLNSPLM 225
PSW GLL+SPLM
Sbjct: 272 PSWQGLLHSPLM 283
>ref|NP_565673.1| Dof zinc finger protein; protein id: At2g28510.1, supported by
cDNA: 16423., supported by cDNA: gi_17979382
[Arabidopsis thaliana] gi|17979383|gb|AAL49917.1|
putative DOF zinc finger protein [Arabidopsis thaliana]
gi|20197881|gb|AAD21486.2| putative DOF zinc finger
protein [Arabidopsis thaliana]
gi|25054955|gb|AAN71953.1| putative DOF zinc finger
protein [Arabidopsis thaliana]
Length = 288
Score = 63.5 bits (153), Expect = 2e-09
Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 4/119 (3%)
Frame = -3
Query: 569 FLGTNNNNVQNLYYGYGNGDMGEVENGVGVSGDMMLPYDQELSSTIATTQAVTVTTMKQE 390
F G N +L YG+ +G+ +N + +++ST+ ++ KQE
Sbjct: 185 FGGQNGTYNNSLCYGFMSGNGNNNQNEI------------KMASTLG--MSLEGNERKQE 230
Query: 389 LCSGRE---QNESKVLWGFPWQLNHGDHTHMGGELDSGRANWNGLTPSW-HGLLNSPLM 225
+ +N SKV WGFPWQ+ GD + E+D GR +WNG+ SW +GLLN+PL+
Sbjct: 231 NVNNNNNNSENPSKVFWGFPWQMT-GDSAGVVPEIDPGRESWNGMVSSWNNGLLNTPLV 288
>gb|AAM62856.1| putative DOF zinc finger protein [Arabidopsis thaliana]
Length = 288
Score = 63.5 bits (153), Expect = 2e-09
Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 4/119 (3%)
Frame = -3
Query: 569 FLGTNNNNVQNLYYGYGNGDMGEVENGVGVSGDMMLPYDQELSSTIATTQAVTVTTMKQE 390
F G N +L YG+ +G+ +N + +++ST+ ++ KQE
Sbjct: 185 FGGQNGTYNNSLCYGFVSGNGNNNQNEI------------KMASTLG--MSLEGNERKQE 230
Query: 389 LCSGRE---QNESKVLWGFPWQLNHGDHTHMGGELDSGRANWNGLTPSW-HGLLNSPLM 225
+ +N SKV WGFPWQ+ GD + E+D GR +WNG+ SW +GLLN+PL+
Sbjct: 231 NVNNNNNNSENPSKVFWGFPWQMT-GDSAGVVPEIDPGRESWNGMVSSWNNGLLNTPLV 288
>pir||G84685 probable DOF zinc finger protein [imported] - Arabidopsis thaliana
Length = 259
Score = 63.5 bits (153), Expect = 2e-09
Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 4/119 (3%)
Frame = -3
Query: 569 FLGTNNNNVQNLYYGYGNGDMGEVENGVGVSGDMMLPYDQELSSTIATTQAVTVTTMKQE 390
F G N +L YG+ +G+ +N + +++ST+ ++ KQE
Sbjct: 156 FGGQNGTYNNSLCYGFMSGNGNNNQNEI------------KMASTLG--MSLEGNERKQE 201
Query: 389 LCSGRE---QNESKVLWGFPWQLNHGDHTHMGGELDSGRANWNGLTPSW-HGLLNSPLM 225
+ +N SKV WGFPWQ+ GD + E+D GR +WNG+ SW +GLLN+PL+
Sbjct: 202 NVNNNNNNSENPSKVFWGFPWQMT-GDSAGVVPEIDPGRESWNGMVSSWNNGLLNTPLV 259
>ref|NP_190147.1| Dof zinc finger protein; protein id: At3g45610.1, supported by
cDNA: gi_17065413 [Arabidopsis thaliana]
gi|11357272|pir||T47501 dof6 zinc finger protein -
Arabidopsis thaliana gi|6996264|emb|CAB75490.1| dof6
zinc finger protein [Arabidopsis thaliana]
gi|17065414|gb|AAL32861.1| dof6 zinc finger protein
[Arabidopsis thaliana]
Length = 245
Score = 40.4 bits (93), Expect = 0.017
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Frame = -3
Query: 584 SLRSGFLGTNNNNVQNLYYGYGNGDMGEVENGVGVSGDMMLPYDQELSSTIATTQAVTVT 405
S + G NNNN+ N G + +GVS + Q S +A T
Sbjct: 116 SFPTASFGYNNNNISNEQMELGLAYALLNKQPLGVSSHLGFGSSQ---SPMAMDGVYGTT 172
Query: 404 TMKQELCS--------GREQ----NESKVLWGFPWQLNHG-----DHTHMGGELDSGRAN 276
+ + E G EQ + ++VLWGFPWQ+N G H H+ ++DSGR
Sbjct: 173 SHQMENTGYAFGNGGGGMEQMATSDPNRVLWGFPWQMNMGGGSGHGHGHV-DQIDSGREI 231
Query: 275 WN 270
W+
Sbjct: 232 WS 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,796,591
Number of Sequences: 1393205
Number of extensions: 13042995
Number of successful extensions: 48137
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 42234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47614
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
