Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003193A_C01 KMC003193A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190756.1| high mobility group protein 2-like; protein id:... 193 1e-48
pir||T02252 high mobility group protein HMG-1 - common tobacco g... 155 2e-37
gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil] 154 5e-37
sp|P40619|HMGL_PHANI HMG1/2-like protein gi|1085860|pir||S40302 ... 153 1e-36
pir||T07377 high mobility group protein - potato gi|2894109|emb|... 151 4e-36
>ref|NP_190756.1| high mobility group protein 2-like; protein id: At3g51880.1,
supported by cDNA: gi_15912190 [Arabidopsis thaliana]
gi|11346370|pir||T51159 HMG protein [imported] -
Arabidopsis thaliana gi|2832357|emb|CAA74400.1| HMG
protein [Arabidopsis thaliana] gi|3068715|gb|AAC14415.1|
unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis
thaliana] gi|21360557|gb|AAM47475.1| At3g51880/ORF13
[Arabidopsis thaliana]
Length = 178
Score = 193 bits (490), Expect = 1e-48
Identities = 101/140 (72%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Frame = +3
Query: 72 KGKKAGKTSKEVLKPVDDRKVGKRKA-AVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFL 248
KGK KT+KE LKPVDDRKVGKRKA A KP K K KKAKKDPNKPKR PSAFFVFL
Sbjct: 5 KGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFL 64
Query: 249 EDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNK 428
EDFR TFK ENPNVK VSAVGKAGG+KWKS+++AEKAPYE KAAKRKAEYEK ++AYN
Sbjct: 65 EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN-- 122
Query: 429 QASTADDVDEESDKSKSEIN 488
++ +ES+KS+SEIN
Sbjct: 123 --KNLEEGSDESEKSRSEIN 140
>pir||T02252 high mobility group protein HMG-1 - common tobacco
gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana
tabacum]
Length = 142
Score = 155 bits (392), Expect = 2e-37
Identities = 78/122 (63%), Positives = 98/122 (79%)
Frame = +3
Query: 123 DRKVGKRKAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVS 302
D K+G RK A + K AKKA KDPNKPKRPPSAFFVF+E+FRKT+K ++PN K V+
Sbjct: 11 DSKLGVRKKATETKK-----AKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVA 65
Query: 303 AVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSE 482
AVGKAGG+ WK L++AEKAPY+AKA KRKAEY+K ++AYN KQA A+ ++ESDKSKSE
Sbjct: 66 AVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAE--EDESDKSKSE 123
Query: 483 IN 488
++
Sbjct: 124 VH 125
>gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 154 bits (389), Expect = 5e-37
Identities = 78/115 (67%), Positives = 91/115 (78%)
Frame = +3
Query: 144 KAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGG 323
K AVK K+KK+ KDPNKPKRPPSAFFVF+EDFRKT+K ++PN K V+AVGKAGG
Sbjct: 13 KLAVKKRGCETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGG 72
Query: 324 EKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSEIN 488
+KWK LT AEKAP+ AKA KRK EYEK + AYN KQA A D +EESDKS+SE+N
Sbjct: 73 DKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQAGEAAD-EEESDKSRSEVN 126
>sp|P40619|HMGL_PHANI HMG1/2-like protein gi|1085860|pir||S40302 high mobility group
protein HMG-1 - Pharbitis nil
Length = 144
Score = 153 bits (386), Expect = 1e-36
Identities = 76/115 (66%), Positives = 90/115 (78%)
Frame = +3
Query: 144 KAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGG 323
K AVK K KKA KDPNKPKRPPSAFFVF+EDFRKT+K ++PN K V+ VGKAGG
Sbjct: 13 KLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGG 72
Query: 324 EKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSEIN 488
+KWK LT AEKAP+ +KA KRK EYEK + AYN KQA+ A + +EESDKS+SE+N
Sbjct: 73 DKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAE-EEESDKSRSEVN 126
>pir||T07377 high mobility group protein - potato gi|2894109|emb|CAA05365.1|
high mobility group protein [Solanum tuberosum]
Length = 141
Score = 151 bits (381), Expect = 4e-36
Identities = 77/122 (63%), Positives = 95/122 (77%)
Frame = +3
Query: 123 DRKVGKRKAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVS 302
D K+G RK A + + KAK A KDPNKPKRPPSAFFVF+E+FRKT+K ++PN K V+
Sbjct: 11 DTKLGVRKKATE-----SKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVA 65
Query: 303 AVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSE 482
VGKAGG+KWK L+ EKAPY+AKA KRKAEY+K ++AYN K A+ D DEESDKSKSE
Sbjct: 66 VVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAA-GDADDEESDKSKSE 124
Query: 483 IN 488
++
Sbjct: 125 VH 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,154,801
Number of Sequences: 1393205
Number of extensions: 9022600
Number of successful extensions: 53884
Number of sequences better than 10.0: 1426
Number of HSP's better than 10.0 without gapping: 49989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52618
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
