Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003191A_C01 KMC003191A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10232.1| metallothionein-like protein class II [Fagus syl... 119 2e-26
sp|P43399|MTB_TRIRP Metallothionein-like protein B gi|480753|pir... 119 3e-26
sp|P20830|MT1_PEA Metallothionein-like protein 1 gi|81919|pir||S... 119 3e-26
sp|Q39458|MT1_CICAR Metallothionein-like protein 1 (MT-1) gi|125... 119 3e-26
gb|AAF04584.1|AF189766_1 type 1 metallothionein [Medicago sativa] 117 1e-25
>emb|CAA10232.1| metallothionein-like protein class II [Fagus sylvatica]
Length = 79
Score = 119 bits (298), Expect = 2e-26
Identities = 51/73 (69%), Positives = 58/73 (78%), Gaps = 1/73 (1%)
Frame = -2
Query: 524 SCGCGNSCSCGSDCK-CNKYSDFSFAEKSTTETLIMGVAPVKASFEGAEMGVGAEDNGCK 348
+CGCG C CGS C C Y D S+ EK+TTETLI+GVAP KA EG+EMGVGAE+ GCK
Sbjct: 7 NCGCGTGCKCGSGCGGCKAYPDLSYTEKTTTETLIVGVAPQKAHSEGSEMGVGAENGGCK 66
Query: 347 CGSDCTCDPCNCK 309
CGS+CTCDPCNCK
Sbjct: 67 CGSNCTCDPCNCK 79
>sp|P43399|MTB_TRIRP Metallothionein-like protein B gi|480753|pir||S37240
metallothionein-like protein - white clover
gi|403329|emb|CAA81265.1| metallothionein-like protein
[Trifolium repens]
Length = 75
Score = 119 bits (297), Expect = 3e-26
Identities = 50/75 (66%), Positives = 57/75 (75%), Gaps = 1/75 (1%)
Frame = -2
Query: 530 MSSCGCGNSCSCGSDCKCNKYSD-FSFAEKSTTETLIMGVAPVKASFEGAEMGVGAEDNG 354
MS C CG+SC+CG CKCNK S ++ E TTET+I+GV P K FE AEMGV AED+G
Sbjct: 1 MSGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSG 60
Query: 353 CKCGSDCTCDPCNCK 309
CKCGS CTCDPCNCK
Sbjct: 61 CKCGSSCTCDPCNCK 75
>sp|P20830|MT1_PEA Metallothionein-like protein 1 gi|81919|pir||S09098 metallothionein
- garden pea gi|312505|emb|CAA80645.1|
metallothionein-like protein [Pisum sativum]
Length = 75
Score = 119 bits (297), Expect = 3e-26
Identities = 49/75 (65%), Positives = 57/75 (75%), Gaps = 1/75 (1%)
Frame = -2
Query: 530 MSSCGCGNSCSCGSDCKCNKYSD-FSFAEKSTTETLIMGVAPVKASFEGAEMGVGAEDNG 354
MS CGCG+SC+CG CKCNK S S++E TTET+I+GV P K FEGAEM +ED G
Sbjct: 1 MSGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGG 60
Query: 353 CKCGSDCTCDPCNCK 309
CKCG +CTCDPCNCK
Sbjct: 61 CKCGDNCTCDPCNCK 75
>sp|Q39458|MT1_CICAR Metallothionein-like protein 1 (MT-1) gi|1255702|emb|CAA65008.1|
metallothionein [Cicer arietinum]
Length = 75
Score = 119 bits (297), Expect = 3e-26
Identities = 50/75 (66%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = -2
Query: 530 MSSCGCGNSCSCGSDCKCNKYSDFSFAEKS-TTETLIMGVAPVKASFEGAEMGVGAEDNG 354
MS C CG+SC+CG CKCNK S S+ E TTET+++GV P K FEGAEM V AED G
Sbjct: 1 MSGCNCGSSCNCGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGG 60
Query: 353 CKCGSDCTCDPCNCK 309
CKCGS CTCDPCNCK
Sbjct: 61 CKCGSSCTCDPCNCK 75
>gb|AAF04584.1|AF189766_1 type 1 metallothionein [Medicago sativa]
Length = 75
Score = 117 bits (292), Expect = 1e-25
Identities = 49/75 (65%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = -2
Query: 530 MSSCGCGNSCSCGSDCKCN-KYSDFSFAEKSTTETLIMGVAPVKASFEGAEMGVGAEDNG 354
MS C CG+SC+CG +CKCN + S + E TTET+I+GV P K FEGAEMGV AED G
Sbjct: 1 MSGCNCGSSCNCGDNCKCNSRSSGLGYLEGETTETVILGVGPAKIHFEGAEMGVAAEDGG 60
Query: 353 CKCGSDCTCDPCNCK 309
CKCG CTCDPCNCK
Sbjct: 61 CKCGDSCTCDPCNCK 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,783,810
Number of Sequences: 1393205
Number of extensions: 10052744
Number of successful extensions: 35719
Number of sequences better than 10.0: 276
Number of HSP's better than 10.0 without gapping: 30864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34447
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
