Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003188A_C01 KMC003188A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563786.1| expressed protein; protein id: At1g07320.1, sup... 129 4e-29
sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplast precur... 128 6e-29
pir||T09171 ribosomal protein L4 - spinach gi|2792020|emb|CAA636... 128 8e-29
gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana] 127 2e-28
pir||D86208 protein F22G5.34 [imported] - Arabidopsis thaliana g... 127 2e-28
>ref|NP_563786.1| expressed protein; protein id: At1g07320.1, supported by cDNA:
12704., supported by cDNA: gi_17380865 [Arabidopsis
thaliana] gi|21542429|sp|O50061|RK4_ARATH 50S ribosomal
protein L4, chloroplast precursor (R-protein L4)
gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis
thaliana] gi|21436209|gb|AAM51392.1| unknown protein
[Arabidopsis thaliana]
Length = 282
Score = 129 bits (323), Expect = 4e-29
Identities = 60/92 (65%), Positives = 77/92 (83%)
Frame = -2
Query: 649 KDFIAALNRWGLDPKEKATFVVTELSKNVELSSRNIGTLKILTPRTLNLYDILNADKLVL 470
KDF+AA+ RWGLDPKEKA F++ ++ +NV SSRNIGTL++LTPRTLNL+DILNADKLVL
Sbjct: 190 KDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVL 249
Query: 469 TPGAVEFLNQRYGVNNQDNDDEEDEYVEEEEE 374
TP AVEFLN RYGV+ + +D++++ E EE
Sbjct: 250 TPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281
>sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplast precursor (R-protein L4)
gi|7440644|pir||T09170 ribosomal protein L4, chloroplast
- spinach gi|2792007|emb|CAA75149.1| chloroplast
ribosomal protein L4 [Spinacia oleracea]
Length = 293
Score = 128 bits (322), Expect = 6e-29
Identities = 59/96 (61%), Positives = 79/96 (81%)
Frame = -2
Query: 649 KDFIAALNRWGLDPKEKATFVVTELSKNVELSSRNIGTLKILTPRTLNLYDILNADKLVL 470
KDFIAA+ RWGLDP EK+ F + +L +NVE S RNI TLK+LTPR+LNL+D+LNA+KLV
Sbjct: 188 KDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVF 247
Query: 469 TPGAVEFLNQRYGVNNQDNDDEEDEYVEEEEEVEEG 362
T G +++LNQRYGV+ +++DEE+E EE EEV++G
Sbjct: 248 TEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDG 283
>pir||T09171 ribosomal protein L4 - spinach gi|2792020|emb|CAA63651.1| ribosomal
protein L4 [Spinacia oleracea]
Length = 293
Score = 128 bits (321), Expect = 8e-29
Identities = 59/96 (61%), Positives = 79/96 (81%)
Frame = -2
Query: 649 KDFIAALNRWGLDPKEKATFVVTELSKNVELSSRNIGTLKILTPRTLNLYDILNADKLVL 470
KDFIAA+ RWGLDP EK+ F + +L +NVE S RNI TLK+LTPR+LNL+D+LNA+KLV
Sbjct: 188 KDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVF 247
Query: 469 TPGAVEFLNQRYGVNNQDNDDEEDEYVEEEEEVEEG 362
T G +++LNQRYGV+ +++DEE+E EE EEV++G
Sbjct: 248 TEGTIQYLNQRYGVDTLEDEDEEEEEGEEGEEVDDG 283
>gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana]
Length = 282
Score = 127 bits (318), Expect = 2e-28
Identities = 59/92 (64%), Positives = 76/92 (82%)
Frame = -2
Query: 649 KDFIAALNRWGLDPKEKATFVVTELSKNVELSSRNIGTLKILTPRTLNLYDILNADKLVL 470
KDF+AA+ RWGLDPKEK F++ ++ +NV SSRNIGTL++LTPRTLNL+DILNADKLVL
Sbjct: 190 KDFLAAMQRWGLDPKEKPMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVL 249
Query: 469 TPGAVEFLNQRYGVNNQDNDDEEDEYVEEEEE 374
TP AVEFLN RYGV+ + +D++++ E EE
Sbjct: 250 TPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281
>pir||D86208 protein F22G5.34 [imported] - Arabidopsis thaliana
gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34
[Arabidopsis thaliana]
Length = 278
Score = 127 bits (318), Expect = 2e-28
Identities = 61/86 (70%), Positives = 75/86 (86%), Gaps = 1/86 (1%)
Frame = -2
Query: 649 KDFIAALNRWGLDPKEKATFVVTELSKNVELSSRNIGTLKILTPRTLNLYDILNADKLVL 470
KDF+AA+ RWGLDPKEKA F++ ++ +NV SSRNIGTL++LTPRTLNL+DILNADKLVL
Sbjct: 190 KDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVL 249
Query: 469 TPGAVEFLNQRYGVNN-QDNDDEEDE 395
TP AVEFLN RYGV+ ++ DD+EDE
Sbjct: 250 TPAAVEFLNARYGVDAVEEEDDDEDE 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,023,110
Number of Sequences: 1393205
Number of extensions: 13011690
Number of successful extensions: 203995
Number of sequences better than 10.0: 2593
Number of HSP's better than 10.0 without gapping: 85089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154666
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
