Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003187A_C01 KMC003187A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O24304|PFTA_PEA Protein farnesyltransferase alpha subunit (CA... 166 1e-40
pir||T51811 protein farnesyltransferase (EC 2.5.1.-) chain A [im... 103 1e-21
ref|NP_567084.1| farnesyltransferase alpha subunit (FTA)(protein... 102 1e-21
sp|Q9LX33|PFTA_ARATH Protein farnesyltransferase alpha subunit (... 102 1e-21
sp|P93227|PFTA_LYCES Protein farnesyltransferase alpha subunit (... 93 1e-18
>sp|O24304|PFTA_PEA Protein farnesyltransferase alpha subunit (CAAX farnesyltransferase
alpha subunit) (RAS proteins prenyltransferase alpha)
(FTase-alpha) gi|7488837|pir||T06516 protein
farnesyltransferase (EC 2.5.1.-) alpha chain - garden
pea gi|2246442|gb|AAB62580.1| farnesyltransferase alpha
subunit
Length = 333
Score = 166 bits (420), Expect = 1e-40
Identities = 82/110 (74%), Positives = 89/110 (80%)
Frame = -2
Query: 453 ENESSWRYLRGLFKGETALYVNDPQVPSVCLKILNTKSNYLFALSTLLDLISLGYQPNED 274
ENESSWRYLRGLFK E+ LYVND QV S+CLKIL TKSNYLFALSTLLDL + QPNED
Sbjct: 224 ENESSWRYLRGLFKDESTLYVNDAQVSSLCLKILKTKSNYLFALSTLLDLSASVIQPNED 283
Query: 273 FRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWRKCRVSQVA 124
FRDAIEA++ KQD DIA ICSILEQVDPIR NYW+WRK R+ Q A
Sbjct: 284 FRDAIEALRLQILIKQDSDIAITICSILEQVDPIRVNYWVWRKSRLPQAA 333
>pir||T51811 protein farnesyltransferase (EC 2.5.1.-) chain A [imported] -
Arabidopsis thaliana gi|3142698|gb|AAC61853.1| protein
farnesyltransferase subunit A [Arabidopsis thaliana]
Length = 326
Score = 103 bits (256), Expect = 1e-21
Identities = 49/110 (44%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 450 NESSWRYLRGLFKGETALYVNDPQVPSVCLKILN-TKSNYLFALSTLLDLISLGYQPNED 274
NESSWRYL+ L+K + +++DP V SVCL +L+ T + FALSTLLDL+ G +P +
Sbjct: 219 NESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNE 278
Query: 273 FRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWRKCRVSQVA 124
+D++ A+ ++ + ++A +C+IL +VDPIRANYW WRK +++ A
Sbjct: 279 HKDSVRALAN---EEPETNLANLVCTILGRVDPIRANYWAWRKSKITVAA 325
>ref|NP_567084.1| farnesyltransferase alpha subunit (FTA)(protein
farnesyltransferase), putative; protein id: At3g59380.1,
supported by cDNA: gi_3142697 [Arabidopsis thaliana]
Length = 326
Score = 102 bits (255), Expect = 1e-21
Identities = 48/110 (43%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 450 NESSWRYLRGLFKGETALYVNDPQVPSVCLKILN-TKSNYLFALSTLLDLISLGYQPNED 274
NESSWRYL+ L+K + +++DP V SVCL +L+ T + FALSTLLDL+ G +P +
Sbjct: 219 NESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNE 278
Query: 273 FRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWRKCRVSQVA 124
+D++ A+ ++ + ++A +C+IL +VDP+RANYW WRK +++ A
Sbjct: 279 HKDSVRALAN---EEPETNLANLVCTILGRVDPVRANYWAWRKSKITVAA 325
>sp|Q9LX33|PFTA_ARATH Protein farnesyltransferase alpha subunit (CAAX farnesyltransferase
alpha subunit) (RAS proteins prenyltransferase alpha)
(FTase-alpha) gi|11281722|pir||T49006
farnesyltransferase subunit A (FTA) - Arabidopsis
thaliana gi|7801688|emb|CAB91608.1| farnesyltransferase
subunit A (FTA) [Arabidopsis thaliana]
Length = 340
Score = 102 bits (255), Expect = 1e-21
Identities = 48/110 (43%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 450 NESSWRYLRGLFKGETALYVNDPQVPSVCLKILN-TKSNYLFALSTLLDLISLGYQPNED 274
NESSWRYL+ L+K + +++DP V SVCL +L+ T + FALSTLLDL+ G +P +
Sbjct: 233 NESSWRYLKALYKDDKESWISDPSVSSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNE 292
Query: 273 FRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWRKCRVSQVA 124
+D++ A+ ++ + ++A +C+IL +VDP+RANYW WRK +++ A
Sbjct: 293 HKDSVRALAN---EEPETNLANLVCTILGRVDPVRANYWAWRKSKITVAA 339
>sp|P93227|PFTA_LYCES Protein farnesyltransferase alpha subunit (CAAX farnesyltransferase
alpha subunit) (RAS proteins prenyltransferase alpha)
(FTase-alpha) gi|7489003|pir||T07665
farnesyltranstransferase (EC 2.5.1.29) alpha chain -
tomato gi|1815666|gb|AAC49665.1| farnesyl protein
transferase subunit A [Lycopersicon esculentum]
Length = 346
Score = 93.2 bits (230), Expect = 1e-18
Identities = 45/106 (42%), Positives = 66/106 (61%)
Frame = -2
Query: 453 ENESSWRYLRGLFKGETALYVNDPQVPSVCLKILNTKSNYLFALSTLLDLISLGYQPNED 274
ENES WRYLRGL+K +T V D QV SV +L ++++++ AL LLDL+ +P+++
Sbjct: 222 ENESPWRYLRGLYKNDTQSLVQDSQVASVLWDVLTSQNSHVHALRFLLDLLCHDLEPSQE 281
Query: 273 FRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWRKCRV 136
+ A++ + T D + + ICSILE DP+R YW WRK V
Sbjct: 282 LKSAVDVL-TPQSCSPDLALTKKICSILEHADPMRVKYWNWRKSMV 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,748,409
Number of Sequences: 1393205
Number of extensions: 6667732
Number of successful extensions: 14537
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14527
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
