Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003185A_C01 KMC003185A_c01
(1146 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40193|R11C_LOTJA Ras-related protein Rab11C gi|1370146|emb|C... 419 e-116
sp|Q39434|RAB2_BETVU Ras-related protein Rab2BV gi|7438391|pir||... 386 e-106
ref|NP_172221.1| GTP-binding protein, putative; protein id: At1g... 377 e-103
ref|NP_190267.1| GTP-binding protein, putative; protein id: At3g... 377 e-103
sp|Q40523|R11A_TOBAC Ras-related protein Rab11A gi|7438412|pir||... 377 e-103
>sp|Q40193|R11C_LOTJA Ras-related protein Rab11C gi|1370146|emb|CAA98179.1| RAB11C [Lotus
japonicus]
Length = 216
Score = 419 bits (1077), Expect = e-116
Identities = 212/213 (99%), Positives = 213/213 (99%)
Frame = -3
Query: 949 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 770
RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA
Sbjct: 4 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63
Query: 769 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 590
QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA
Sbjct: 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123
Query: 589 GNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALA 410
GNKSDLNHLRAVSEDDGGAL+EKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALA
Sbjct: 124 GNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALA 183
Query: 409 AQEATAGASVPGQGTTINVADTSGNTKKGCCST 311
AQEATAGASVPGQGTTINVADTSGNTKKGCCST
Sbjct: 184 AQEATAGASVPGQGTTINVADTSGNTKKGCCST 216
>sp|Q39434|RAB2_BETVU Ras-related protein Rab2BV gi|7438391|pir||T14566 GTP-binding
protein 2 - beet gi|974778|emb|CAA89049.1| small G
protein [Beta vulgaris]
Length = 214
Score = 386 bits (992), Expect = e-106
Identities = 196/214 (91%), Positives = 205/214 (95%)
Frame = -3
Query: 952 SRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 773
+RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK
Sbjct: 3 NRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 62
Query: 772 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 593
AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 122
Query: 592 AGNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 413
AGNKSDL HLRAVSE+DG ALAEKEGLSFLETSALEA NIEKAFQTILTEIYHI+SKKAL
Sbjct: 123 AGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKAL 182
Query: 412 AAQEATAGASVPGQGTTINVADTSGNTKKGCCST 311
AAQEA+ +++PGQGTTINVAD S N ++ CCST
Sbjct: 183 AAQEAS--SNLPGQGTTINVADASANQRRSCCST 214
>ref|NP_172221.1| GTP-binding protein, putative; protein id: At1g07410.1 [Arabidopsis
thaliana]
Length = 214
Score = 377 bits (969), Expect = e-103
Identities = 188/214 (87%), Positives = 204/214 (94%)
Frame = -3
Query: 952 SRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 773
+R+DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK
Sbjct: 3 NRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 62
Query: 772 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 593
AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NV RWLRELRDHADSNIVIMM
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMM 122
Query: 592 AGNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 413
AGNKSDLNHLR+V+++DG +LAEKEGLSFLETSALEATNIEKAFQTIL+EIYHI+SKKAL
Sbjct: 123 AGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKAL 182
Query: 412 AAQEATAGASVPGQGTTINVADTSGNTKKGCCST 311
AAQE A ++PGQGT IN++D+S +KGCCST
Sbjct: 183 AAQE--AAGNLPGQGTAINISDSSATNRKGCCST 214
>ref|NP_190267.1| GTP-binding protein, putative; protein id: At3g46830.1, supported
by cDNA: 35596., supported by cDNA: gi_20465470
[Arabidopsis thaliana] gi|3915842|sp|Q96283|RB1A_ARATH
Ras-related protein Rab11A gi|7438399|pir||T12965
GTP-binding protein rab11 - Arabidopsis thaliana
gi|2598229|emb|CAA70112.1| Rab11 protein [Arabidopsis
thaliana] gi|5541676|emb|CAB51182.1| Rab11 protein
[Arabidopsis thaliana] gi|17529190|gb|AAL38821.1|
putative GTP-binding protein Rab11 [Arabidopsis
thaliana] gi|20465471|gb|AAM20195.1| putative
GTP-binding protein Rab11 [Arabidopsis thaliana]
gi|21593047|gb|AAM64996.1| GTP-binding protein Rab11
[Arabidopsis thaliana]
Length = 217
Score = 377 bits (969), Expect = e-103
Identities = 190/214 (88%), Positives = 202/214 (93%), Gaps = 1/214 (0%)
Frame = -3
Query: 949 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 770
RVD EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT QVEGKT+KA
Sbjct: 4 RVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKA 63
Query: 769 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 590
QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHADSNIVIMMA
Sbjct: 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 123
Query: 589 GNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALA 410
GNKSDLNHLR+V+E+DG +LAEKEGLSFLETSALEATN+EKAFQTIL EIYHI+SKKALA
Sbjct: 124 GNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALA 183
Query: 409 AQE-ATAGASVPGQGTTINVADTSGNTKKGCCST 311
AQE A A +++PGQGTTINV DTSG K+ CCS+
Sbjct: 184 AQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217
>sp|Q40523|R11A_TOBAC Ras-related protein Rab11A gi|7438412|pir||T03625 GTP-binding
protein Rab11a - common tobacco gi|623582|gb|AAA74115.1|
Nt-Rab11a gene product
Length = 216
Score = 377 bits (969), Expect = e-103
Identities = 187/214 (87%), Positives = 200/214 (93%)
Frame = -3
Query: 952 SRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 773
+RVDHEYDYLFK+VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK
Sbjct: 3 NRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 62
Query: 772 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 593
AQIWDTAGQERYRAITSAYYRGAVGALL YDITKRQTFDNVQRWLRELRDH DSNIVI++
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIIL 122
Query: 592 AGNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 413
AGNKSDL HLRAVSE D AL +KEGLSFLETSALEA N++KAFQTILT+IYHI+SKKAL
Sbjct: 123 AGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKAL 182
Query: 412 AAQEATAGASVPGQGTTINVADTSGNTKKGCCST 311
AAQEA A ++PGQGTTINV+D S N K+GCCST
Sbjct: 183 AAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 996,477,093
Number of Sequences: 1393205
Number of extensions: 22666643
Number of successful extensions: 78208
Number of sequences better than 10.0: 2361
Number of HSP's better than 10.0 without gapping: 70501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76630
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 70281887232
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
