Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003184A_C01 KMC003184A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL61999.1| putative glutamate receptor protein GLR3.4b [Arab... 81 1e-14
pir||T51137 ionotropic glutamate receptor homolog GLR4 [imported... 81 1e-14
pir||D86186 hypothetical protein [imported] - Arabidopsis thalia... 81 1e-14
ref|NP_172012.1| putative ligand-gated ion channel protein; prot... 81 1e-14
pir||T51135 ligand-gated channel-like protein precursor [importe... 78 8e-14
>gb|AAL61999.1| putative glutamate receptor protein GLR3.4b [Arabidopsis thaliana]
Length = 959
Score = 80.9 bits (198), Expect = 1e-14
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = -2
Query: 596 FLICGIACLLTLIAFFVRVFCQYMKFIPEP---EVADEEVQSSRSRRFMKIGSASFKDLI 426
FLICGI C + L FF RVF QY + +PE E A E + SRS R + + SFK+LI
Sbjct: 862 FLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSR--APSFKELI 919
Query: 425 DFVDKREKEIKEVLRQKSNKRRRS-QSIDGQSSS 327
VDKRE EIKE+L+QKS+K+ +S QS G S S
Sbjct: 920 KVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQS 953
>pir||T51137 ionotropic glutamate receptor homolog GLR4 [imported] - Arabidopsis
thaliana
Length = 976
Score = 80.9 bits (198), Expect = 1e-14
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = -2
Query: 596 FLICGIACLLTLIAFFVRVFCQYMKFIPEP---EVADEEVQSSRSRRFMKIGSASFKDLI 426
FLICGI C + L FF RVF QY + +PE E A E + SRS R + + SFK+LI
Sbjct: 879 FLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSR--APSFKELI 936
Query: 425 DFVDKREKEIKEVLRQKSNKRRRS-QSIDGQSSS 327
VDKRE EIKE+L+QKS+K+ +S QS G S S
Sbjct: 937 KVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQS 970
>pir||D86186 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388577|gb|AAB71458.1| Similar to Arabidopsis putative
ion-channel PID:g2262157 (gb|AC002329). [Arabidopsis
thaliana]
Length = 962
Score = 80.9 bits (198), Expect = 1e-14
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = -2
Query: 596 FLICGIACLLTLIAFFVRVFCQYMKFIPEP---EVADEEVQSSRSRRFMKIGSASFKDLI 426
FLICGI C + L FF RVF QY + +PE E A E + SRS R + + SFK+LI
Sbjct: 865 FLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSR--APSFKELI 922
Query: 425 DFVDKREKEIKEVLRQKSNKRRRS-QSIDGQSSS 327
VDKRE EIKE+L+QKS+K+ +S QS G S S
Sbjct: 923 KVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQS 956
>ref|NP_172012.1| putative ligand-gated ion channel protein; protein id: At1g05200.1,
supported by cDNA: gi_5713180 [Arabidopsis thaliana]
Length = 948
Score = 80.9 bits (198), Expect = 1e-14
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = -2
Query: 596 FLICGIACLLTLIAFFVRVFCQYMKFIPEP---EVADEEVQSSRSRRFMKIGSASFKDLI 426
FLICGI C + L FF RVF QY + +PE E A E + SRS R + + SFK+LI
Sbjct: 851 FLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSR--APSFKELI 908
Query: 425 DFVDKREKEIKEVLRQKSNKRRRS-QSIDGQSSS 327
VDKRE EIKE+L+QKS+K+ +S QS G S S
Sbjct: 909 KVVDKREAEIKEILKQKSSKKLKSTQSAAGTSQS 942
>pir||T51135 ligand-gated channel-like protein precursor [imported] - Arabidopsis
thaliana gi|5713181|gb|AAD47833.1|AF167355_1 ligand-gated
channel-like protein precursor [Arabidopsis thaliana]
Length = 941
Score = 78.2 bits (191), Expect = 8e-14
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 6/94 (6%)
Frame = -2
Query: 596 FLICGIACLLTLIAFFVRVFCQYMKFIPEPEVADEE-----VQSSRSRRFMKIGSASFKD 432
FLICGI C + L FF RVF QY + +PE ADEE + SRS R + + SFK+
Sbjct: 851 FLICGITCFMALTVFFWRVFWQYQRLLPES--ADEERPGEVSEPSRSGRGSR--APSFKE 906
Query: 431 LIDFVDKREKEIKEVLRQKSNKRRRS-QSIDGQS 333
LI VDKRE EIKE+L+QKS+K+ +S QS G S
Sbjct: 907 LIKVVDKREAEIKEILKQKSSKKLKSTQSAAGTS 940
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,771,591
Number of Sequences: 1393205
Number of extensions: 8729435
Number of successful extensions: 22629
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 21889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22605
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
