Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003183A_C01 KMC003183A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana... 168 5e-41
ref|NP_567627.1| putative membrane associated protein; protein i... 168 5e-41
ref|NP_568804.1| membrane associated protein; protein id: At5g54... 153 2e-36
gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana] 153 2e-36
pir||F85063 hypothetical protein AT4g05060 [imported] - Arabidop... 136 2e-31
>pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana
gi|3080389|emb|CAA18709.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|7268942|emb|CAB81252.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 293
Score = 168 bits (425), Expect = 5e-41
Identities = 83/96 (86%), Positives = 90/96 (93%)
Frame = -3
Query: 590 IMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEA 411
IMSLKVKG MDYVPELFDEQKD V+ EQILRVIFLDPER +PALEKLKRQLA+ADAA+EA
Sbjct: 193 IMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLKRQLAEADAAVEA 252
Query: 410 RKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGE 303
RKKP E+ GPK+IGEGLVIDEWKERRERYLA+QQGE
Sbjct: 253 RKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGE 288
>ref|NP_567627.1| putative membrane associated protein; protein id: At4g21450.1,
supported by cDNA: 33975., supported by cDNA:
gi_17979372, supported by cDNA: gi_20465772 [Arabidopsis
thaliana] gi|17979373|gb|AAL49912.1| putative membrane
associated protein [Arabidopsis thaliana]
gi|20465773|gb|AAM20375.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|21592907|gb|AAM64857.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 295
Score = 168 bits (425), Expect = 5e-41
Identities = 83/96 (86%), Positives = 90/96 (93%)
Frame = -3
Query: 590 IMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEA 411
IMSLKVKG MDYVPELFDEQKD V+ EQILRVIFLDPER +PALEKLKRQLA+ADAA+EA
Sbjct: 195 IMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLKRQLAEADAAVEA 254
Query: 410 RKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGE 303
RKKP E+ GPK+IGEGLVIDEWKERRERYLA+QQGE
Sbjct: 255 RKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGE 290
>ref|NP_568804.1| membrane associated protein; protein id: At5g54110.1, supported by
cDNA: gi_1800146 [Arabidopsis thaliana]
Length = 266
Score = 153 bits (386), Expect = 2e-36
Identities = 74/98 (75%), Positives = 88/98 (89%)
Frame = -3
Query: 590 IMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEA 411
IMSLKVK ++YVPELFDEQKDQVAVEQ+LRVIF+D +RPS ALEKLKRQL +A+AA+EA
Sbjct: 165 IMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEA 224
Query: 410 RKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGEVV 297
RKKP + GP+++GEGLVIDEWKERRE+YLA+QQ E V
Sbjct: 225 RKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262
>gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana]
Length = 265
Score = 153 bits (386), Expect = 2e-36
Identities = 74/98 (75%), Positives = 88/98 (89%)
Frame = -3
Query: 590 IMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEA 411
IMSLKVK ++YVPELFDEQKDQVAVEQ+LRVIF+D +RPS ALEKLKRQL +A+AA+EA
Sbjct: 164 IMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEA 223
Query: 410 RKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGEVV 297
RKKP + GP+++GEGLVIDEWKERRE+YLA+QQ E V
Sbjct: 224 RKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 261
>pir||F85063 hypothetical protein AT4g05060 [imported] - Arabidopsis thaliana
gi|5732080|gb|AAD48979.1|AF162444_11 contains similarity
to Arabidopsis thaliana membrane associated protein
(GB:U83655) gi|7267265|emb|CAB81048.1| contains
similarity to Arabidopsis thaliana membrane associated
protein (GB:U83655)~similarity to~contains EST
gb:T04787, AA651401
Length = 269
Score = 136 bits (342), Expect = 2e-31
Identities = 69/98 (70%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Frame = -3
Query: 590 IMSLKVKGAMDYVPELFDEQKDQVAVEQILRVIFLDPERPSPALEKLKRQLADADAALEA 411
IMSLK+K DY+PELF+EQKD V+ EQ++RV+FLDPE P+ +EKLK QLA+ADAA EA
Sbjct: 169 IMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMMEKLKSQLAEADAADEA 228
Query: 410 RKKPAED-AGPKIIGEGLVIDEWKERRERYLAKQQGEV 300
RKK +E GPK IGEGLVIDEWK+RRERYLA+QQG V
Sbjct: 229 RKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQGGV 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,202,763
Number of Sequences: 1393205
Number of extensions: 10234175
Number of successful extensions: 32059
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 30074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31768
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
