Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003182A_C01 KMC003182A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_069047.1| similar to trace amine receptor 2 [Rattus norve... 36 0.33
ref|XP_204524.1| similar to putative neurotransmitter receptor [... 34 1.3
ref|XP_136991.1| similar to trace amine receptor 2 [Rattus norve... 34 1.3
ref|NP_504806.1| Predicted CDS, LysM domain and Glycosyl hydrola... 34 1.6
ref|NP_522755.1| PROBABLE PROLINE RICH TRANSMEMBRANE PROTEIN [Ra... 33 2.1
>ref|XP_069047.1| similar to trace amine receptor 2 [Rattus norvegicus] [Homo
sapiens]
Length = 220
Score = 36.2 bits (82), Expect = 0.33
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 7/67 (10%)
Frame = -3
Query: 192 LAILCFLLFCT-------SKLNMCCWRGDPTLFCCIFVCCNMFVTSAKLHSLAFFSVHKC 34
+AI FLL C + + C + GD LFC + CC++ + + + L F SV +
Sbjct: 76 MAITDFLLSCVVMPFSVITSIESCWYFGD--LFCKVHSCCDIILCTTSIFHLCFISVDRT 133
Query: 33 FTINIDI 13
T+ I I
Sbjct: 134 TTVGIYI 140
>ref|XP_204524.1| similar to putative neurotransmitter receptor [Homo sapiens] [Mus
musculus]
Length = 563
Score = 34.3 bits (77), Expect = 1.3
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Frame = -3
Query: 399 LCPSGTDIN-FYNMTSQITKEET*PGGSRFSPPNVTIC-----SACGRL*HPTLVLL*VW 238
LC SG I F T + +T +S P V C S+C R P LV+ ++
Sbjct: 58 LCQSGDRITAFLRSTHSTHRTKTMNTPDPWSSPEVQFCFAAANSSCPRKARPALVVCAMY 117
Query: 237 CL-------------ALFTTFVHIFDYQ---------LAILCFLLFCT-------SKLNM 145
+ A+ + H +A FLL C +
Sbjct: 118 LIMIGAIVMTMLGNMAVIISIAHFKQLHSPTNFLILSMATTDFLLSCVVMPFSMIRSIES 177
Query: 144 CCWRGDPTLFCCIFVCCNMFVTSAKLHSLAFFSVHKCFTI 25
C + GD LFC + CC++ + + + L F SV + + +
Sbjct: 178 CWYFGD--LFCKVHSCCDIMLCTTSIFHLCFISVDRHYAV 215
>ref|XP_136991.1| similar to trace amine receptor 2 [Rattus norvegicus] [Mus
musculus]
Length = 427
Score = 34.3 bits (77), Expect = 1.3
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Frame = -3
Query: 399 LCPSGTDIN-FYNMTSQITKEET*PGGSRFSPPNVTIC-----SACGRL*HPTLVLL*VW 238
LC SG I F T + +T +S P V C S+C R P LV+ ++
Sbjct: 58 LCQSGDRITAFLRSTHSTHRTKTMNTPDPWSSPEVQFCFAAANSSCPRKARPALVVCAMY 117
Query: 237 CL-------------ALFTTFVHIFDYQ---------LAILCFLLFCT-------SKLNM 145
+ A+ + H +A FLL C +
Sbjct: 118 LIMIGAIVMTMLGNMAVIISIAHFKQLHSPTNFLILSMATTDFLLSCVVMPFSMIRSIES 177
Query: 144 CCWRGDPTLFCCIFVCCNMFVTSAKLHSLAFFSVHKCFTI 25
C + GD LFC + CC++ + + + L F SV + + +
Sbjct: 178 CWYFGD--LFCKVHSCCDIMLCTTSIFHLCFISVDRHYAV 215
>ref|NP_504806.1| Predicted CDS, LysM domain and Glycosyl hydrolases family 18
precursor family member [Caenorhabditis elegans]
gi|7506843|pir||T29275 hypothetical protein T01C4.1 -
Caenorhabditis elegans gi|1572836|gb|AAB09177.1|
Hypothetical protein T01C4.1 [Caenorhabditis elegans]
Length = 1484
Score = 33.9 bits (76), Expect = 1.6
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Frame = -3
Query: 570 VGWAREDEEGWRVGCGSW-GSTKFEWMMMNG*ILFRGRRSTHFATEK 433
VGW ++EGW G +W TK ++M NG +F G + EK
Sbjct: 1240 VGWRNLEKEGWNKGSATWHKKTKTPYIMNNGARMFLGFENERSLKEK 1286
>ref|NP_522755.1| PROBABLE PROLINE RICH TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum] gi|17431668|emb|CAD18345.1| PROBABLE
PROLINE RICH TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 142
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 453 LIFVLGKEFNHSSSSTRTWSNPTTHIRPATPPHPLEPT-RLGSPVFPEPT 599
L +G SS W P T IRPA PH + P+ + PV P P+
Sbjct: 26 LAMAMGLGLAACSSPMPPWEPPRTTIRPAPQPHAVSPSPAMAQPVRPAPS 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,921,880
Number of Sequences: 1393205
Number of extensions: 13278239
Number of successful extensions: 48933
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 41971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48385
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
