Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003173A_C03 KMC003173A_c03
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populu... 67 1e-10
ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11);... 65 6e-10
gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana] 65 6e-10
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 60 3e-08
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 60 3e-08
>gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populus x canescens]
Length = 240
Score = 67.4 bits (163), Expect = 1e-10
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = -1
Query: 580 RLPLNVNALGNSIVNISTGMVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAP 401
RL LNV GNS VNI+TG+ N S+ G +Y+D LAV+ VDKVLLPLD F T K P AP
Sbjct: 136 RLELNVTTTGNS-VNITTGLTNTSVSGTIYTDNQLAVHQVDKVLLPLDIF-TPKPPTPAP 193
Query: 400 S 398
+
Sbjct: 194 A 194
>ref|NP_195937.1| fasciclin-like arabinogalactan-protein (FLA11); protein id:
At5g03170.1, supported by cDNA: 14950., supported by
cDNA: gi_13430541 [Arabidopsis thaliana]
gi|11281995|pir||T48338 arabinogalactan protein-like -
Arabidopsis thaliana gi|7413594|emb|CAB86084.1|
arabinogalactan protein-like [Arabidopsis thaliana]
gi|9757768|dbj|BAB08377.1| contains similarity to
arabinogalactan protein~gene_id:MOK16.8 [Arabidopsis
thaliana] gi|13430542|gb|AAK25893.1|AF360183_1 putative
arabinogalactan protein [Arabidopsis thaliana]
gi|14532750|gb|AAK64076.1| putative arabinogalactan
protein [Arabidopsis thaliana]
Length = 246
Score = 65.1 bits (157), Expect = 6e-10
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = -1
Query: 580 RLPLNVNALGNSIVNISTGMVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAP 401
+ PLN+ + GN VNI+TG+V+A++ VYSD+ LAVY VD+VLLPL F ++ APA AP
Sbjct: 137 KFPLNITSSGNQ-VNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAP 195
>gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 246
Score = 65.1 bits (157), Expect = 6e-10
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = -1
Query: 580 RLPLNVNALGNSIVNISTGMVNASIIGVVYSDRNLAVYHVDKVLLPLDFFLTAKAPALAP 401
+ PLN+ + GN VNI+TG+V+A++ VYSD+ LAVY VD+VLLPL F ++ APA AP
Sbjct: 137 KFPLNITSSGNQ-VNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAP 195
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 59.7 bits (143), Expect = 3e-08
Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = -1
Query: 574 PLNVNALGNSIVNISTGMVNASIIGVVYSDRNLAVYHVDKVLLPLDFF-LTAKAPALAPS 398
PLNV GN+ VNI++G+ N ++ G VYSD LAVY VDKVLLP F APA APS
Sbjct: 141 PLNVTTSGNT-VNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPS 199
Query: 397 LS 392
+S
Sbjct: 200 VS 201
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 59.7 bits (143), Expect = 3e-08
Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = -1
Query: 574 PLNVNALGNSIVNISTGMVNASIIGVVYSDRNLAVYHVDKVLLPLDFF-LTAKAPALAPS 398
PLNV GN+ VNI++G+ N ++ G VYSD LAVY VDKVLLP F APA APS
Sbjct: 140 PLNVTTSGNT-VNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPS 198
Query: 397 LS 392
+S
Sbjct: 199 VS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,166,573
Number of Sequences: 1393205
Number of extensions: 11094328
Number of successful extensions: 47595
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 45691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47502
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
