Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003172A_C01 KMC003172A_c01
(791 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565372.1| expressed protein; protein id: At2g15290.1, sup... 193 3e-48
ref|NP_440150.1| unknown protein [Synechocystis sp. PCC 6803] gi... 74 2e-12
ref|NP_488153.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 67 4e-10
gb|ZP_00105923.1| hypothetical protein [Nostoc punctiforme] 64 3e-09
gb|ZP_00111932.1| hypothetical protein [Nostoc punctiforme] 62 1e-08
>ref|NP_565372.1| expressed protein; protein id: At2g15290.1, supported by cDNA:
gi_15982806, supported by cDNA: gi_17528961 [Arabidopsis
thaliana] gi|25411626|pir||B84527 hypothetical protein
At2g15290 [imported] - Arabidopsis thaliana
gi|4662632|gb|AAD26904.1| expressed protein [Arabidopsis
thaliana] gi|15982807|gb|AAL09751.1| At2g15290/F27O10.6
[Arabidopsis thaliana] gi|17528962|gb|AAL38691.1|
unknown protein [Arabidopsis thaliana]
gi|21689685|gb|AAM67464.1| unknown protein [Arabidopsis
thaliana]
Length = 296
Score = 193 bits (490), Expect = 3e-48
Identities = 96/126 (76%), Positives = 114/126 (90%)
Frame = -2
Query: 790 WSFGYIRLSEKLRKTANQPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAK 611
WSFGYIRLSE+LR+T+ P KAPPRADVVK L++GI+VN+LGMG+A+LGMQATVG LVAK
Sbjct: 171 WSFGYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAK 230
Query: 610 ALTSAANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEAL 431
ALT++ANP+YQG++ G SPVLALDVFLVQASANT+LSHFLGLV SLELLRSVT+P SE++
Sbjct: 231 ALTTSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESV 290
Query: 430 PFPKFA 413
PK A
Sbjct: 291 VVPKVA 296
>ref|NP_440150.1| unknown protein [Synechocystis sp. PCC 6803] gi|7459399|pir||S74679
hypothetical protein sll1656 - Synechocystis sp. (strain
PCC 6803) gi|1651904|dbj|BAA16830.1|
ORF_ID:sll1656~unknown protein [Synechocystis sp. PCC
6803]
Length = 191
Score = 73.9 bits (180), Expect = 2e-12
Identities = 42/109 (38%), Positives = 67/109 (60%)
Frame = -2
Query: 790 WSFGYIRLSEKLRKTANQPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAK 611
+S Y RL L+ + + TK P RAD++K ++ G+++NL+GMG AI+G A G+++ K
Sbjct: 81 FSTRYRRLGRNLKDS--EATKHPRRADILKLIRIGLIINLVGMGTAIIGGAAMSGIVLGK 138
Query: 610 ALTSAANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLVFSLELL 464
AL+ + P V + D+ +QA+ NTI++HF GL+ SL LL
Sbjct: 139 ALSVPPGTFASAADPNRF-VQSTDLLAIQANINTIIAHFTGLLSSLWLL 186
>ref|NP_488153.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25335473|pir||AB2320
hypothetical protein all4113 [imported] - Nostoc sp.
(strain PCC 7120) gi|17133248|dbj|BAB75812.1|
ORF_ID:all4113~hypothetical protein [Nostoc sp. PCC
7120]
Length = 194
Score = 66.6 bits (161), Expect = 4e-10
Identities = 38/112 (33%), Positives = 64/112 (56%)
Frame = -2
Query: 790 WSFGYIRLSEKLRKTANQPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAK 611
W F Y R+ + L P P +AD ++++ GI+V+L+G+ ++G AT+G+L+AK
Sbjct: 85 WDFRYTRIGKHLANP--NPALHPSKADTTQAIRLGIIVSLVGILLTLIGAGATLGVLIAK 142
Query: 610 ALTSAANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLVFSLELLRSV 455
S + P I + + ALDVF++ + N I +HF+G + S+ LL V
Sbjct: 143 ---SISQPPGVAITDPNKIIRALDVFVMVGNINGIAAHFVGAIASIWLLERV 191
>gb|ZP_00105923.1| hypothetical protein [Nostoc punctiforme]
Length = 204
Score = 63.9 bits (154), Expect = 3e-09
Identities = 40/114 (35%), Positives = 68/114 (59%)
Frame = -2
Query: 787 SFGYIRLSEKLRKTANQPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAKA 608
++ Y R+ ++L ++ P+ P +++ V+ L+ G+ VNL G +LG QA VG LVA++
Sbjct: 95 AYRYTRIGKQLE--SSNPSNRPRKSETVQVLRLGLWVNLGGTLVTLLGAQAIVGTLVARS 152
Query: 607 LTSAANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLP 446
++ A Q P + + LD+ +VQA+ NT+ +HF GL+ SL LL + P
Sbjct: 153 ISPQAIT-TQFFDP-TRIISGLDMLVVQANTNTVSAHFAGLIASLWLLNRINRP 204
>gb|ZP_00111932.1| hypothetical protein [Nostoc punctiforme]
Length = 189
Score = 62.0 bits (149), Expect = 1e-08
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Frame = -2
Query: 790 WSFGYIRLSEKLRKTANQPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAK 611
W + Y R+ + L + P P +AD + L+ GIV+ L+GM +LG +TV +L+AK
Sbjct: 80 WDYRYTRIGKALENS--NPALHPSKADTTRILRLGIVIGLVGMLLTLLGAGSTVLVLIAK 137
Query: 610 ALT-----SAANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLVFSLELLRSV 455
+++ + NPY + + A+DVF+ A I +H++G V SL LL V
Sbjct: 138 SISQPPGVAITNPY--------NIIRAMDVFVAVADITGIAAHYVGTVASLWLLERV 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,870,994
Number of Sequences: 1393205
Number of extensions: 14600606
Number of successful extensions: 40241
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 38780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40219
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
