Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003171A_C01 KMC003171A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P42469|ATPB_STIAU ATP synthase beta chain gi|587526|emb|CAA54... 34 1.3
gb|AAG34815.1|AF243380_1 glutathione S-transferase GST 25 [Glyci... 33 3.8
gb|ZP_00000583.1| hypothetical protein [Ferroplasma acidarmanus] 32 6.5
>sp|P42469|ATPB_STIAU ATP synthase beta chain gi|587526|emb|CAA54206.1| ATPase
beta-subunit [Stigmatella aurantiaca]
Length = 481
Score = 34.3 bits (77), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (69%)
Frame = +2
Query: 359 GRISVPRSWVQLACCIVAGSLAKPPGS 439
G +S PR+W++ C +V G + +PPG+
Sbjct: 207 GNVSTPRTWMESQCVLVYGQMNEPPGA 233
>gb|AAG34815.1|AF243380_1 glutathione S-transferase GST 25 [Glycine max]
Length = 219
Score = 32.7 bits (73), Expect = 3.8
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -1
Query: 497 MDEFPILARLT*DHIMRSQHFREALPENQP 408
M+EFPILARL + F+EALPENQP
Sbjct: 187 MNEFPILARLH-ETYNEIPAFQEALPENQP 215
>gb|ZP_00000583.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 482
Score = 32.0 bits (71), Expect = 6.5
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = -1
Query: 275 VAIRLPPATLDLHASMYNTQWITYIGLLV 189
V + LP T+DLHA NT W+ + LLV
Sbjct: 30 VILALPTLTVDLHAPFINTIWVILVYLLV 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,960,899
Number of Sequences: 1393205
Number of extensions: 12445103
Number of successful extensions: 24493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24483
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
