Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003170A_C01 KMC003170A_c01
(436 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703745.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.47
gb|EAA17230.1| chloroquine resistance marker protein [Plasmodium... 32 2.4
ref|NP_473030.1| hypothetical protein [Plasmodium falciparum 3D7... 32 2.4
ref|NP_506604.1| Predicted CDS, putative plasma membrane membran... 31 3.1
gb|AAK31120.1| cytochrome oxidase subunit II [Pulex simulans] gi... 31 4.0
>ref|NP_703745.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498406|emb|CAD50357.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1948
Score = 33.9 bits (76), Expect = 0.47
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 23 LNVYNL*FSTTEKYNVLFE*WV*ATSFSFGFVRKNII*LNMKRIECQIMVMIIYYKY-FY 199
LNVYN+ + K N+L + + +T+F+ +I+ + +I+C I ++ ++ Y F
Sbjct: 1386 LNVYNIILNILRKKNIL-QHFNLSTTFNVYMYSVDIL-IKSTKIKCAIYLIFLFIFYLFI 1443
Query: 200 YEECHLLYIFY*LNTFFLQYCFYY 271
Y + L+IFY +F++ YY
Sbjct: 1444 YLFVYFLFIFY---SFYIYIFIYY 1464
>gb|EAA17230.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 711
Score = 31.6 bits (70), Expect = 2.4
Identities = 24/64 (37%), Positives = 31/64 (47%)
Frame = -3
Query: 278 YFDSKNNIEEKKYSINKKCIIDDTLRNKNICNKLSLPLFDTQSSSYLIK*CSF*QNQN*M 99
YF+ K I ++ Y NK IDD + N K + T +YLIK F QNQN +
Sbjct: 184 YFNMKLYIYKEYYEHNKLKFIDDYIFNSKFYKK-KKNKYKTIQLNYLIKEDHFIQNQNNI 242
Query: 98 MLLI 87
LI
Sbjct: 243 NTLI 246
>ref|NP_473030.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494170|pir||D71613 GAF domain protein (cyclic nt
signal transduct.) PFB0510w - malaria parasite
(Plasmodium falciparum) gi|3845203|gb|AAC71891.1|
hypothetical protein [Plasmodium falciparum 3D7]
Length = 1245
Score = 31.6 bits (70), Expect = 2.4
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 323 KFKPLLFYYRWAVKFYFDSKNNIEEKKYSINKKCIIDDTLRNKNI-CNKL 177
KF + Y +W F+ S EEKKY I K +D+ ++ NI CN L
Sbjct: 101 KFGNMGTYKKWQCSFFSTS----EEKKYKIEKYMKLDEKKKDNNISCNDL 146
>ref|NP_506604.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 4 transmembrane domains, nematode
specific [Caenorhabditis elegans] gi|7497852|pir||T20167
hypothetical protein C53A5.8 - Caenorhabditis elegans
Length = 348
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -3
Query: 323 KFKPLLFYYRWAVKFYFDSK--NNIEEKKYSINKKCIIDDTLRNKNICNKLSL 171
KF+ L Y R VKF ++K NN+ +K ++ + +++ + R++ + KLSL
Sbjct: 217 KFRMLKNYGRVFVKFLTETKERNNLGKKLANLGQSLLLEVSTRSREVARKLSL 269
>gb|AAK31120.1| cytochrome oxidase subunit II [Pulex simulans]
gi|13569442|gb|AAK31121.1| cytochrome oxidase subunit II
[Pulex simulans]
Length = 226
Score = 30.8 bits (68), Expect = 4.0
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = -3
Query: 299 YRWAVKFYFDSKNNIEEKKYSINKKCIIDDTLRNKNICNKLSLPLFDTQ 153
+RW + + NNIE + Y I + ++D R ++ N++ LP F++Q
Sbjct: 102 HRWYWSYEYSDFNNIEFESYMIPNEELMDSNFRLLDVDNRIILP-FNSQ 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,833,944
Number of Sequences: 1393205
Number of extensions: 6160524
Number of successful extensions: 17662
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17636
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
