Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003167A_C01 KMC003167A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabi... 84 1e-15
gb|AAF24553.1|AC007508_16 F1K23.24 [Arabidopsis thaliana] 84 1e-15
ref|NP_565972.1| expressed protein; protein id: At2g42400.1, sup... 70 1e-11
pir||E84853 hypothetical protein At2g42400 [imported] - Arabidop... 70 1e-11
dbj|BAB89542.1| P0435B05.21 [Oryza sativa (japonica cultivar-gro... 54 1e-06
>ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabidopsis thaliana]
gi|25370819|pir||B86411 protein F3M18.4 [imported] -
Arabidopsis thaliana
gi|6560771|gb|AAF16771.1|AC010155_24 F3M18.4
[Arabidopsis thaliana]
Length = 486
Score = 84.0 bits (206), Expect = 1e-15
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Frame = -3
Query: 512 HLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNQMGKLTAAVSSSDDALP 333
HL+EYEIN D CALYRLELKLVD KK+ KGKV+ +S+ DLQ QMG+LTA P
Sbjct: 374 HLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQKQMGRLTA-------EFP 426
Query: 332 DQGNTTPTSKN-----VGCPETLSKFRCGDCAK*LNKLYIFGDG 216
+ NTT T+ N G P+ +K G+ + + +G G
Sbjct: 427 PENNTTNTTNNNKRCIKGRPKVSTKVATGNVQNTVEQANDYGVG 470
>gb|AAF24553.1|AC007508_16 F1K23.24 [Arabidopsis thaliana]
Length = 190
Score = 84.0 bits (206), Expect = 1e-15
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Frame = -3
Query: 512 HLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNQMGKLTAAVSSSDDALP 333
HL+EYEIN D CALYRLELKLVD KK+ KGKV+ +S+ DLQ QMG+LTA P
Sbjct: 78 HLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQKQMGRLTA-------EFP 130
Query: 332 DQGNTTPTSKN-----VGCPETLSKFRCGDCAK*LNKLYIFGDG 216
+ NTT T+ N G P+ +K G+ + + +G G
Sbjct: 131 PENNTTNTTNNNKRCIKGRPKVSTKVATGNVQNTVEQANDYGVG 174
>ref|NP_565972.1| expressed protein; protein id: At2g42400.1, supported by cDNA:
gi_13605699, supported by cDNA: gi_18700277 [Arabidopsis
thaliana] gi|13605700|gb|AAK32843.1|AF361831_1
At2g42400/MHK10.12 [Arabidopsis thaliana]
gi|18700278|gb|AAL77749.1| At2g42400/MHK10.12
[Arabidopsis thaliana] gi|20197490|gb|AAD23723.2|
expressed protein [Arabidopsis thaliana]
Length = 450
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/63 (53%), Positives = 46/63 (72%)
Frame = -3
Query: 512 HLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNQMGKLTAAVSSSDDALP 333
HLFEY+IN D CALYRLELK+ + KKSPKGK++++ L DLQ +MG+ V+S + P
Sbjct: 387 HLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADLQKKMGQF--KVASDKPSPP 444
Query: 332 DQG 324
+G
Sbjct: 445 TKG 447
>pir||E84853 hypothetical protein At2g42400 [imported] - Arabidopsis thaliana
Length = 473
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/63 (53%), Positives = 46/63 (72%)
Frame = -3
Query: 512 HLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNQMGKLTAAVSSSDDALP 333
HLFEY+IN D CALYRLELK+ + KKSPKGK++++ L DLQ +MG+ V+S + P
Sbjct: 410 HLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADLQKKMGQF--KVASDKPSPP 467
Query: 332 DQG 324
+G
Sbjct: 468 TKG 470
>dbj|BAB89542.1| P0435B05.21 [Oryza sativa (japonica cultivar-group)]
Length = 636
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = -3
Query: 512 HLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNQMGKLTA 363
HL+EYEIN+ D ALYRLE K D KK+ K K+ L ++Q QM +L+A
Sbjct: 505 HLYEYEINDCDAFALYRLEFKSSDAKKTAKSKLACNPLNEIQQQMVRLSA 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,790,584
Number of Sequences: 1393205
Number of extensions: 9580867
Number of successful extensions: 24773
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24764
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
