Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003166A_C01 KMC003166A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191354.1| putative protein; protein id: At3g57950.1 [Arab... 63 2e-09
pir||T00927 hypothetical protein At2g42180 [imported] - Arabidop... 61 8e-09
ref|NP_181747.2| hypothetical protein; protein id: At2g42180.1, ... 61 8e-09
ref|NP_196297.1| putative protein; protein id: At5g06790.1 [Arab... 52 4e-06
ref|NP_199603.1| putative protein; protein id: At5g47920.1 [Arab... 37 0.15
>ref|NP_191354.1| putative protein; protein id: At3g57950.1 [Arabidopsis thaliana]
gi|11357951|pir||T46017 hypothetical protein T10K17.160
- Arabidopsis thaliana gi|6729538|emb|CAB67623.1|
putative protein [Arabidopsis thaliana]
Length = 181
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 5/64 (7%)
Frame = -2
Query: 546 LRWLEEKKVQGGDDVKEEKEV-----NENIDMLAEMFIAHCHEKFRLEKQESDRRFQERL 382
L WLE KK DDV+E +V +++ID LA+MFIA+CHEKF LEK ES RRFQE L
Sbjct: 121 LEWLEHKKF---DDVEEIGDVVADGGDDDIDHLADMFIANCHEKFLLEKVESYRRFQEML 177
Query: 381 ARSM 370
R +
Sbjct: 178 ERGL 181
>pir||T00927 hypothetical protein At2g42180 [imported] - Arabidopsis thaliana
gi|2673909|gb|AAB88643.1| hypothetical protein
[Arabidopsis thaliana]
Length = 111
Score = 61.2 bits (147), Expect = 8e-09
Identities = 33/65 (50%), Positives = 45/65 (68%), Gaps = 6/65 (9%)
Frame = -2
Query: 546 LRWLEEKKVQGGDDVKEEKEVNE------NIDMLAEMFIAHCHEKFRLEKQESDRRFQER 385
L+WLEE+ V +++ +++ V E +ID LA+ FIA CHEKF LEK ES RRFQ+
Sbjct: 48 LQWLEER-VDENNNINDDQSVGERDVGDDDIDRLADKFIARCHEKFLLEKVESYRRFQDM 106
Query: 384 LARSM 370
LARS+
Sbjct: 107 LARSL 111
>ref|NP_181747.2| hypothetical protein; protein id: At2g42180.1, supported by cDNA:
gi_18491300 [Arabidopsis thaliana]
gi|18491301|gb|AAL69475.1| At2g42180/T24P15.9
[Arabidopsis thaliana]
Length = 113
Score = 61.2 bits (147), Expect = 8e-09
Identities = 33/65 (50%), Positives = 45/65 (68%), Gaps = 6/65 (9%)
Frame = -2
Query: 546 LRWLEEKKVQGGDDVKEEKEVNE------NIDMLAEMFIAHCHEKFRLEKQESDRRFQER 385
L+WLEE+ V +++ +++ V E +ID LA+ FIA CHEKF LEK ES RRFQ+
Sbjct: 50 LQWLEER-VDENNNINDDQSVGERDVGDDDIDRLADKFIARCHEKFLLEKVESYRRFQDM 108
Query: 384 LARSM 370
LARS+
Sbjct: 109 LARSL 113
>ref|NP_196297.1| putative protein; protein id: At5g06790.1 [Arabidopsis thaliana]
gi|9759307|dbj|BAB09813.1|
emb|CAB67623.1~gene_id:MPH15.15~similar to unknown
protein [Arabidopsis thaliana]
Length = 209
Score = 52.4 bits (124), Expect = 4e-06
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = -2
Query: 546 LRWLEEKKVQGGDDVKEEKEVNENIDMLAEMFIAHCHEKFRLEKQESDRRFQERLARS 373
LR LE+K V+ G + + E +NE ID LA+ FIA+CHEKF LEK +S RR Q L RS
Sbjct: 153 LRQLEDK-VKDGQEEETETMMNE-IDKLADRFIANCHEKFMLEKVDSYRRSQGTLNRS 208
>ref|NP_199603.1| putative protein; protein id: At5g47920.1 [Arabidopsis thaliana]
gi|10177928|dbj|BAB11339.1|
emb|CAB67623.1~gene_id:MCA23.26~similar to unknown
protein [Arabidopsis thaliana]
gi|26449488|dbj|BAC41870.1| unknown protein [Arabidopsis
thaliana]
Length = 187
Score = 37.0 bits (84), Expect = 0.15
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = -2
Query: 525 KVQGGDDVKEEKEVNENIDMLAEMFIAHCHEKFRLEKQESDRRFQERLAR 376
K + G++ K E E ID +A++FI+ H++ +L+K S +R+QE LAR
Sbjct: 140 KEEEGENFKLEDE----IDHVADLFISRFHKQMKLQKLLSFKRYQEMLAR 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,941,536
Number of Sequences: 1393205
Number of extensions: 9751784
Number of successful extensions: 34032
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33576
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
