Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003165A_C01 KMC003165A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173390.1| ribokinase, putative; protein id: At1g19600.1 [... 101 5e-43
dbj|BAB16906.1| P0005A05.10 [Oryza sativa (japonica cultivar-gro... 91 9e-39
ref|NP_754070.1| Hypothetical sugar kinase ydjH [Escherichia col... 46 6e-07
ref|NP_288208.1| putative kinase [Escherichia coli O157:H7 EDL93... 46 6e-07
ref|NP_707341.1| putative kinase [Shigella flexneri 2a str. 301]... 46 8e-07
>ref|NP_173390.1| ribokinase, putative; protein id: At1g19600.1 [Arabidopsis
thaliana] gi|25513635|pir||F86328 F14P1.7 protein -
Arabidopsis thaliana
gi|8778428|gb|AAF79436.1|AC025808_18 F18O14.35
[Arabidopsis thaliana]
gi|9795587|gb|AAF98405.1|AC024609_6 Unknown protein
[Arabidopsis thaliana] gi|28466957|gb|AAO44087.1|
At1g19600 [Arabidopsis thaliana]
Length = 355
Score = 101 bits (251), Expect(2) = 5e-43
Identities = 44/54 (81%), Positives = 51/54 (93%)
Frame = -1
Query: 326 FLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQWMYKQMQLKGLPPPD 165
FLYGL+KGLSLEECCK+G+CSGGSV+R+LGGEVT EN QWM+KQ+QLKGLP PD
Sbjct: 299 FLYGLIKGLSLEECCKVGSCSGGSVIRALGGEVTPENWQWMHKQLQLKGLPVPD 352
Score = 94.7 bits (234), Expect(2) = 5e-43
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = -3
Query: 510 EQNADPIAAVEFLAKYCQWAVVTLGSDGCIAKHGKEMIRVPAIGEAKATDATGAGDLFAS 331
EQ A P AA+EFL ++C+WAVVTLGS GCIAKH KE++ + AIGE ATDATGAGDLFAS
Sbjct: 238 EQEAGPEAALEFLGRHCRWAVVTLGSKGCIAKHDKEVVHISAIGETVATDATGAGDLFAS 297
Query: 330 AILVWIGQG 304
L + +G
Sbjct: 298 GFLYGLIKG 306
>dbj|BAB16906.1| P0005A05.10 [Oryza sativa (japonica cultivar-group)]
Length = 377
Score = 91.3 bits (225), Expect(2) = 9e-39
Identities = 42/54 (77%), Positives = 45/54 (82%)
Frame = -1
Query: 326 FLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQWMYKQMQLKGLPPPD 165
FLYGLVKGL+LEECCK+G CSGGSVVR+LGGEV EN QWMYKQM GL PD
Sbjct: 321 FLYGLVKGLALEECCKVGACSGGSVVRALGGEVRPENWQWMYKQMNASGLLLPD 374
Score = 90.5 bits (223), Expect(2) = 9e-39
Identities = 43/69 (62%), Positives = 52/69 (75%)
Frame = -3
Query: 510 EQNADPIAAVEFLAKYCQWAVVTLGSDGCIAKHGKEMIRVPAIGEAKATDATGAGDLFAS 331
E DP A+ FLAKYC+WAVVTL S GCIAKHGK++++V A GE+ A DATGAGDLFAS
Sbjct: 260 ELTFDPEEALAFLAKYCKWAVVTLASKGCIAKHGKQVVQVAATGESNAVDATGAGDLFAS 319
Query: 330 AILVWIGQG 304
L + +G
Sbjct: 320 GFLYGLVKG 328
>ref|NP_754070.1| Hypothetical sugar kinase ydjH [Escherichia coli CFT073]
gi|26108433|gb|AAN80635.1|AE016761_210 Hypothetical
sugar kinase ydjH [Escherichia coli CFT073]
Length = 322
Score = 45.8 bits (107), Expect(2) = 6e-07
Identities = 23/58 (39%), Positives = 31/58 (52%)
Frame = -3
Query: 477 FLAKYCQWAVVTLGSDGCIAKHGKEMIRVPAIGEAKATDATGAGDLFASAILVWIGQG 304
FLA + V+ G DGC K G ++VPA+ A D GAGD FAS + + +G
Sbjct: 223 FLACGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEG 280
Score = 28.5 bits (62), Expect(2) = 6e-07
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 326 FLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQ 210
F+ L++G +L EC + + V S+G V+NR+
Sbjct: 273 FIAALLEGKNLRECARFANATAAISVLSIGATTGVKNRK 311
>ref|NP_288208.1| putative kinase [Escherichia coli O157:H7 EDL933]
gi|15831735|ref|NP_310508.1| putative kinase
[Escherichia coli O157:H7] gi|25287481|pir||A98939
probable kinase [imported] - Escherichia coli (strain
O157:H7, substrain RIMD 0509952) gi|25287482|pir||E85787
probable kinase Z2810 [imported] - Escherichia coli
(strain O157:H7, substrain EDL933)
gi|12515803|gb|AAG56761.1|AE005400_6 putative kinase
[Escherichia coli O157:H7 EDL933]
gi|13361948|dbj|BAB35904.1| putative kinase [Escherichia
coli O157:H7]
Length = 310
Score = 46.2 bits (108), Expect(2) = 6e-07
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = -3
Query: 486 AVEFLAKYCQWAVVTLGSDGCIAKHGKEMIRVPAIGEAKATDATGAGDLFASAILVWIGQ 307
A FLA + V+ G DGC K G ++VPA+ A D GAGD FAS + + +
Sbjct: 208 ADSFLACGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLE 267
Query: 306 G 304
G
Sbjct: 268 G 268
Score = 28.1 bits (61), Expect(2) = 6e-07
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 326 FLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQ 210
F+ L++G +L EC + + V S+G V+NR+
Sbjct: 261 FIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRK 299
>ref|NP_707341.1| putative kinase [Shigella flexneri 2a str. 301]
gi|24051766|gb|AAN43048.1|AE015168_10 putative kinase
[Shigella flexneri 2a str. 301]
Length = 328
Score = 45.8 bits (107), Expect(2) = 8e-07
Identities = 23/58 (39%), Positives = 31/58 (52%)
Frame = -3
Query: 477 FLAKYCQWAVVTLGSDGCIAKHGKEMIRVPAIGEAKATDATGAGDLFASAILVWIGQG 304
FLA + V+ G DGC K G ++VPA+ A D GAGD FAS + + +G
Sbjct: 229 FLACGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEG 286
Score = 28.1 bits (61), Expect(2) = 8e-07
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 326 FLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQ 210
F+ L++G +L EC + + V S+G V+NR+
Sbjct: 279 FIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRK 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,257,852
Number of Sequences: 1393205
Number of extensions: 10757204
Number of successful extensions: 31784
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 30568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31725
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
