KMC003164A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003164A_C01 KMC003164A_c01
AACCTGGCAATAAAATTCACACGCTCTAACTTGATAGAATAATGTCTTAAGGAAAGTCAT
TCTATCTACACATGTTCTACCTTAGGTTTGATCAGTTATACAAACAAGATTACATTTTAC
AGAGTCATAACTATACCGTGTAGGCAAAATACTATTTCAAGTTATTATACATCATGGACC
TCATGCAAATAATCAAATAAAACTCCTGCCTGTGTCCTGTTGTTGGCACTCAGATAGCCA
CAAGTCCATATGTTCTTGAATCTTTTGCCTTGCTTTGTGGACTGCATCAGGGGAAGAGCA
GTTCTTCTCACTCCCTTCAAGAGCCAAAGGAGATTGAGGACACCCTCGAATGTCGACACA
ATGACCACAATTATCACATGTGATGGTGTAGGAAGGCAAATCAGGGGATGAAGTTTGTTT
GGATGCATGACGCCAAGGATCCTGGGAGCCATTTGCAAATATTATCTTTGAACCTGCAAC
TTTTGTGCCTCCGTAGTATAAATTAGTTGCA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003164A_C01 KMC003164A_c01
         (511 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG13566.1|AC073867_12 putative serine peptidase [Oryza sativa]    163  1e-39
ref|NP_567999.1| Expressed protein; protein id: At4g36195.1, sup...   162  2e-39
ref|NP_179399.1| unknown protein; protein id: At2g18080.1 [Arabi...   151  5e-36
ref|NP_567998.1| putative protein; protein id: At4g36190.1 [Arab...   150  1e-35
gb|AAG13567.1|AC073867_13 putative serine peptidase [Oryza sativa]    143  1e-33

>gb|AAG13566.1|AC073867_12 putative serine peptidase [Oryza sativa]
          Length = 628

 Score =  163 bits (412), Expect = 1e-39
 Identities = 69/97 (71%), Positives = 83/97 (85%)
 Frame = -2

Query: 507 TNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQSP 328
           TNLYYGGT++AGSKI+FANGSQDPWRHASKQ SS +LPSY I C NCGHC D+ GCPQ+P
Sbjct: 515 TNLYYGGTRIAGSKIVFANGSQDPWRHASKQKSSKELPSYLIECSNCGHCSDLSGCPQAP 574

Query: 327 LALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQQ 217
             +EG   NCSSP+AV+K R++I +H+DLWLSECQ+Q
Sbjct: 575 SHIEGDSSNCSSPEAVNKVRKQIVDHIDLWLSECQEQ 611

>ref|NP_567999.1| Expressed protein; protein id: At4g36195.1, supported by cDNA:
           gi_14334573 [Arabidopsis thaliana]
           gi|14334574|gb|AAK59466.1| unknown protein [Arabidopsis
           thaliana] gi|22136934|gb|AAM91811.1| unknown protein
           [Arabidopsis thaliana]
          Length = 488

 Score =  162 bits (410), Expect = 2e-39
 Identities = 70/96 (72%), Positives = 81/96 (83%)
 Frame = -2

Query: 510 ATNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQS 331
           ATNLYYG  ++A +KIIF NGSQDPWRHASKQTSSP+LPSY +TC NCGH  D+RGCPQS
Sbjct: 386 ATNLYYGSDRIAATKIIFTNGSQDPWRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQS 445

Query: 330 PLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQ 223
           P+ + G  KNCSSPDAV+K RQ I +HMDLWLSEC+
Sbjct: 446 PMVIGGDSKNCSSPDAVNKVRQHIVDHMDLWLSECR 481

>ref|NP_179399.1| unknown protein; protein id: At2g18080.1 [Arabidopsis thaliana]
           gi|25411828|pir||A84560 hypothetical protein At2g18080
           [imported] - Arabidopsis thaliana
           gi|4406810|gb|AAD20118.1| unknown protein [Arabidopsis
           thaliana]
          Length = 365

 Score =  151 bits (381), Expect = 5e-36
 Identities = 65/97 (67%), Positives = 79/97 (81%)
 Frame = -2

Query: 510 ATNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQS 331
           ATNLYYGG ++A +KIIF NGS+DPWRHASKQ S+ ++PSY I C NCGH  DIRGCPQS
Sbjct: 263 ATNLYYGGDRLAATKIIFTNGSEDPWRHASKQNSTHEMPSYIIKCRNCGHGSDIRGCPQS 322

Query: 330 PLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQ 220
           P+ +EG   NCS PD V+K RQ++ EH+DLWLSEC+Q
Sbjct: 323 PMVIEGKSNNCSLPDYVNKVRQQMVEHIDLWLSECRQ 359

>ref|NP_567998.1| putative protein; protein id: At4g36190.1 [Arabidopsis thaliana]
          Length = 510

 Score =  150 bits (378), Expect = 1e-35
 Identities = 70/107 (65%), Positives = 81/107 (75%), Gaps = 11/107 (10%)
 Frame = -2

Query: 510 ATNLYYGGTKVAGS-----------KIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCG 364
           ATNLYYG  K+A S           KIIF NGSQDPWRHASKQTSSPDLPSY +TC NCG
Sbjct: 403 ATNLYYGSDKIAVSSHLLILNFVATKIIFTNGSQDPWRHASKQTSSPDLPSYIMTCHNCG 462

Query: 363 HCVDIRGCPQSPLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQ 223
           H  D+RGCPQS + +EG  +NCSSPDAV+K RQ + +H+DLWLSEC+
Sbjct: 463 HGSDLRGCPQSAMVIEGDAQNCSSPDAVNKVRQHMIKHIDLWLSECR 509

>gb|AAG13567.1|AC073867_13 putative serine peptidase [Oryza sativa]
          Length = 502

 Score =  143 bits (361), Expect = 1e-33
 Identities = 62/96 (64%), Positives = 73/96 (75%)
 Frame = -2

Query: 507 TNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQSP 328
           TNLYYGGT++A SKI+F NGSQDPWRHASKQ SS  +PSY I C NCGH  D+RGCPQ P
Sbjct: 401 TNLYYGGTRIAASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLP 460

Query: 327 LALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQ 220
             +EG   NCSSP AV   R++I  H+ LWLS+CQ+
Sbjct: 461 FRIEGDPSNCSSPAAVSTVRKQIASHISLWLSQCQE 496

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,964,530
Number of Sequences: 1393205
Number of extensions: 9375022
Number of successful extensions: 25156
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 24508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25147
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR014g07_f BP077059 1 387
2 SPD093a07_f BP051391 15 511




Lotus japonicus
Kazusa DNA Research Institute