KMC003164A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003164A_C01 KMC003164A_c01
AACCTGGCAATAAAATTCACACGCTCTAACTTGATAGAATAATGTCTTAAGGAAAGTCAT
TCTATCTACACATGTTCTACCTTAGGTTTGATCAGTTATACAAACAAGATTACATTTTAC
AGAGTCATAACTATACCGTGTAGGCAAAATACTATTTCAAGTTATTATACATCATGGACC
TCATGCAAATAATCAAATAAAACTCCTGCCTGTGTCCTGTTGTTGGCACTCAGATAGCCA
CAAGTCCATATGTTCTTGAATCTTTTGCCTTGCTTTGTGGACTGCATCAGGGGAAGAGCA
GTTCTTCTCACTCCCTTCAAGAGCCAAAGGAGATTGAGGACACCCTCGAATGTCGACACA
ATGACCACAATTATCACATGTGATGGTGTAGGAAGGCAAATCAGGGGATGAAGTTTGTTT
GGATGCATGACGCCAAGGATCCTGGGAGCCATTTGCAAATATTATCTTTGAACCTGCAAC
TTTTGTGCCTCCGTAGTATAAATTAGTTGCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003164A_C01 KMC003164A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13566.1|AC073867_12 putative serine peptidase [Oryza sativa] 163 1e-39
ref|NP_567999.1| Expressed protein; protein id: At4g36195.1, sup... 162 2e-39
ref|NP_179399.1| unknown protein; protein id: At2g18080.1 [Arabi... 151 5e-36
ref|NP_567998.1| putative protein; protein id: At4g36190.1 [Arab... 150 1e-35
gb|AAG13567.1|AC073867_13 putative serine peptidase [Oryza sativa] 143 1e-33
>gb|AAG13566.1|AC073867_12 putative serine peptidase [Oryza sativa]
Length = 628
Score = 163 bits (412), Expect = 1e-39
Identities = 69/97 (71%), Positives = 83/97 (85%)
Frame = -2
Query: 507 TNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQSP 328
TNLYYGGT++AGSKI+FANGSQDPWRHASKQ SS +LPSY I C NCGHC D+ GCPQ+P
Sbjct: 515 TNLYYGGTRIAGSKIVFANGSQDPWRHASKQKSSKELPSYLIECSNCGHCSDLSGCPQAP 574
Query: 327 LALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQQ 217
+EG NCSSP+AV+K R++I +H+DLWLSECQ+Q
Sbjct: 575 SHIEGDSSNCSSPEAVNKVRKQIVDHIDLWLSECQEQ 611
>ref|NP_567999.1| Expressed protein; protein id: At4g36195.1, supported by cDNA:
gi_14334573 [Arabidopsis thaliana]
gi|14334574|gb|AAK59466.1| unknown protein [Arabidopsis
thaliana] gi|22136934|gb|AAM91811.1| unknown protein
[Arabidopsis thaliana]
Length = 488
Score = 162 bits (410), Expect = 2e-39
Identities = 70/96 (72%), Positives = 81/96 (83%)
Frame = -2
Query: 510 ATNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQS 331
ATNLYYG ++A +KIIF NGSQDPWRHASKQTSSP+LPSY +TC NCGH D+RGCPQS
Sbjct: 386 ATNLYYGSDRIAATKIIFTNGSQDPWRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQS 445
Query: 330 PLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQ 223
P+ + G KNCSSPDAV+K RQ I +HMDLWLSEC+
Sbjct: 446 PMVIGGDSKNCSSPDAVNKVRQHIVDHMDLWLSECR 481
>ref|NP_179399.1| unknown protein; protein id: At2g18080.1 [Arabidopsis thaliana]
gi|25411828|pir||A84560 hypothetical protein At2g18080
[imported] - Arabidopsis thaliana
gi|4406810|gb|AAD20118.1| unknown protein [Arabidopsis
thaliana]
Length = 365
Score = 151 bits (381), Expect = 5e-36
Identities = 65/97 (67%), Positives = 79/97 (81%)
Frame = -2
Query: 510 ATNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQS 331
ATNLYYGG ++A +KIIF NGS+DPWRHASKQ S+ ++PSY I C NCGH DIRGCPQS
Sbjct: 263 ATNLYYGGDRLAATKIIFTNGSEDPWRHASKQNSTHEMPSYIIKCRNCGHGSDIRGCPQS 322
Query: 330 PLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQ 220
P+ +EG NCS PD V+K RQ++ EH+DLWLSEC+Q
Sbjct: 323 PMVIEGKSNNCSLPDYVNKVRQQMVEHIDLWLSECRQ 359
>ref|NP_567998.1| putative protein; protein id: At4g36190.1 [Arabidopsis thaliana]
Length = 510
Score = 150 bits (378), Expect = 1e-35
Identities = 70/107 (65%), Positives = 81/107 (75%), Gaps = 11/107 (10%)
Frame = -2
Query: 510 ATNLYYGGTKVAGS-----------KIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCG 364
ATNLYYG K+A S KIIF NGSQDPWRHASKQTSSPDLPSY +TC NCG
Sbjct: 403 ATNLYYGSDKIAVSSHLLILNFVATKIIFTNGSQDPWRHASKQTSSPDLPSYIMTCHNCG 462
Query: 363 HCVDIRGCPQSPLALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQ 223
H D+RGCPQS + +EG +NCSSPDAV+K RQ + +H+DLWLSEC+
Sbjct: 463 HGSDLRGCPQSAMVIEGDAQNCSSPDAVNKVRQHMIKHIDLWLSECR 509
>gb|AAG13567.1|AC073867_13 putative serine peptidase [Oryza sativa]
Length = 502
Score = 143 bits (361), Expect = 1e-33
Identities = 62/96 (64%), Positives = 73/96 (75%)
Frame = -2
Query: 507 TNLYYGGTKVAGSKIIFANGSQDPWRHASKQTSSPDLPSYTITCDNCGHCVDIRGCPQSP 328
TNLYYGGT++A SKI+F NGSQDPWRHASKQ SS +PSY I C NCGH D+RGCPQ P
Sbjct: 401 TNLYYGGTRIAASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLP 460
Query: 327 LALEGSEKNCSSPDAVHKARQKIQEHMDLWLSECQQ 220
+EG NCSSP AV R++I H+ LWLS+CQ+
Sbjct: 461 FRIEGDPSNCSSPAAVSTVRKQIASHISLWLSQCQE 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,964,530
Number of Sequences: 1393205
Number of extensions: 9375022
Number of successful extensions: 25156
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 24508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25147
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR014g07_f |
BP077059 |
1 |
387 |
2 |
SPD093a07_f |
BP051391 |
15 |
511 |
|
Lotus japonicus
Kazusa DNA Research Institute