Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003162A_C01 KMC003162A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_223740.1| similar to RIKEN cDNA 3010001K23 [Mus musculus]... 32 6.5
ref|XP_223181.1| similar to Hypothetical protein KIAA0053 [Rattu... 31 8.5
>ref|XP_223740.1| similar to RIKEN cDNA 3010001K23 [Mus musculus] [Rattus norvegicus]
Length = 491
Score = 31.6 bits (70), Expect = 6.5
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 488 FLFHFS-LISTRIN*RTSKALRESKVRKKMAEHPPICIVCTLLYAKFTLMRYLILEAKNW 312
+ FHF L++ +I T +AL + + P +C V + F + YL++ +
Sbjct: 134 YAFHFPHLLNPQIQCSTHRALSRRHILHLVLRGPALCFVAAVFSLFFFPLSYLLMVTVIF 193
Query: 311 MSV*A*QPQLFKDTFSGHRAS 249
+ + KD F GHR S
Sbjct: 194 LPHISKATTWCKDKFMGHRES 214
>ref|XP_223181.1| similar to Hypothetical protein KIAA0053 [Rattus norvegicus]
Length = 659
Score = 31.2 bits (69), Expect = 8.5
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 438 KGFEGIQGT*EDG*TSPHLHSL-HLALRKIHSYE 340
KG+EGIQ T E G P SL HL R+ H++E
Sbjct: 522 KGYEGIQYTMETGEKHPRKFSLAHLEARRTHTFE 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,785,823
Number of Sequences: 1393205
Number of extensions: 7817856
Number of successful extensions: 12977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12976
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
