Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003161A_C01 KMC003161A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD70307.1| conserved hypothetical protein [Neurospora crass... 32 3.4
ref|NP_149314.1| Integrin-like repeats domain fused to lysozyme,... 32 4.5
gb|ZP_00017991.1| hypothetical protein [Chloroflexus aurantiacus] 32 4.5
ref|NP_811505.1| hypothetical protein [Bacteroides thetaiotaomic... 32 5.8
ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodiu... 27 6.7
>emb|CAD70307.1| conserved hypothetical protein [Neurospora crassa]
gi|28917353|gb|EAA27059.1| hypothetical protein
[Neurospora crassa]
Length = 951
Score = 32.3 bits (72), Expect = 3.4
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 414 NLIHPELSRCKLAGFFLQRFPTLSPTKKFQSFLNLRQPTIRNFPLNSSHPTSSHIVHLGH 235
++I EL R L+ ++Q FP +LN+R I+ FPL S I+ LG
Sbjct: 82 DIIKDELERLALSHNYIQTFPARFSECTSLRYLNVRSNRIKEFPLALCDLKSLEILDLGR 141
Query: 234 HQM 226
+ +
Sbjct: 142 NML 144
>ref|NP_149314.1| Integrin-like repeats domain fused to lysozyme, LYCV glycosyl
hydrolase [Clostridium acetobutylicum]
gi|14994466|gb|AAK76896.1|AE001438_149 Integrin-like
repeats domain fused to lysozyme, LYCV glycosyl
hydrolase [Clostridium acetobutylicum]
Length = 752
Score = 32.0 bits (71), Expect = 4.5
Identities = 26/118 (22%), Positives = 42/118 (35%)
Frame = -2
Query: 489 DSLLSFHL*SGNFDGKTDTKIWKARNLIHPELSRCKLAGFFLQRFPTLSPTKKFQSFLNL 310
D L+ + N G T+ I +N + F + + PT K F+
Sbjct: 513 DGLIDLYCIKRNGSGATEIHILNGKN---------NFSSFNFESATPMEPTDKNTQFIVS 563
Query: 309 RQPTIRNFPLNSSHPTSSHIVHLGHHQMDRILQMK*FFKTISFIVHTEVTTPNVPYKG 136
+ +P+ TS+ + G D I+FI E +P VPY+G
Sbjct: 564 NDGALNVYPIKKQGATSTEVHEFGTKSQDHDKNYNNSSNLITFIGQYESFSP-VPYRG 620
>gb|ZP_00017991.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 1130
Score = 32.0 bits (71), Expect = 4.5
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 2/55 (3%)
Frame = -2
Query: 387 CKLAGFFLQRFPTLSP--TKKFQSFLNLRQPTIRNFPLNSSHPTSSHIVHLGHHQ 229
C+++GFF FP L + Q+ ++L +P NFP ++ T+ +V+ G Q
Sbjct: 819 CRISGFFRDAFPHLIELLDQAIQTVIDLDEPLELNFPRKHAYLTAQALVNGGTDQ 873
>ref|NP_811505.1| hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339904|gb|AAO77699.1| hypothetical protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 244
Score = 31.6 bits (70), Expect = 5.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 243 LGHHQMDRILQMK*FFKTISFIVHTEVTTPNVPYKGLVLMKMI*G*FGGICFL 85
+GH Q +R++Q++ FK + F + N+P LV K++ G + + +L
Sbjct: 122 IGHQQGERLVQLQAAFKNVHFSAERRIRYNNIPTIRLVSKKILSGTYMRVFYL 174
>ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodium falciparum 3D7]
gi|23499033|emb|CAD51113.1| ubiquitin-protein ligase 1,
putative [Plasmodium falciparum 3D7]
Length = 8591
Score = 26.9 bits (58), Expect(2) = 6.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 46 NKNNYQN*P*LN**KTNSPKLTLNHLHQNQTLVRNIGGCDFSMNYERYRFEESLHLKDS 222
N NN N +N TN+ L +NH++ N+ N + ++Y + S H D+
Sbjct: 3233 NNNNINNLSVVN---TNNNMLNINHVNNNRNRTSNTIENNVLLHYPLNNLDNSYHSDDN 3288
Score = 22.7 bits (47), Expect(2) = 6.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 25 NFNLFNKNKNNYQN 66
N N+FN N NN N
Sbjct: 3196 NVNIFNNNNNNNNN 3209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,557,055
Number of Sequences: 1393205
Number of extensions: 9452025
Number of successful extensions: 23644
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23611
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
