Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003159A_C02 KMC003159A_c02
(1362 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200803.1| RNA and export factor binding protein, putative... 305 1e-81
gb|AAM63758.1| transcriptional coactivator-like protein [Arabido... 301 1e-80
dbj|BAB08363.1| RNA and export factor binding protein 2-I-like p... 299 8e-80
gb|AAM98152.1| putative protein [Arabidopsis thaliana] 275 1e-72
ref|NP_195873.1| RNA and export factor binding protein, putative... 272 8e-72
>ref|NP_200803.1| RNA and export factor binding protein, putative; protein id:
At5g59950.1, supported by cDNA: 26907. [Arabidopsis
thaliana] gi|22531190|gb|AAM97099.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
gi|23198018|gb|AAN15536.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
Length = 244
Score = 305 bits (780), Expect = 1e-81
Identities = 166/257 (64%), Positives = 192/257 (74%), Gaps = 3/257 (1%)
Frame = -3
Query: 1264 MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRI-PNRASNRAAPYAAPKAPE 1088
MS LDM+LDD+I KN+KS R GSGPGP RR PNR S R+APY + KAPE
Sbjct: 1 MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60
Query: 1087 TAWGHDMYADEPVQVAAFPGHGGGRASS-IETGTKLYISNLDYGVSSDDIKELFSEVGDL 911
+ WGHDM++D H GR+S+ IETGTKLYISNLDYGV ++DIKELF+EVG+L
Sbjct: 61 STWGHDMFSDRSED------HRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGEL 114
Query: 910 KRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAP 731
KR+TVH+DRSGRSKGTAEVV+SRRGDA AAVK+YN+VQLDGKPMKIEIVGTN+ T A AP
Sbjct: 115 KRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAP 173
Query: 730 AANGAFGNSNGVP-RSGQGRGGAFGRLRGGGDGGRGRGHRRGRGRGRGHGRGRGEKVSAE 554
+ A GNSNG P R GQGRG G+ RGGG GG GRG G GRGR G+G EK+SAE
Sbjct: 174 SGRPANGNSNGAPWRGGQGRG---GQQRGGGRGGGGRG---GGGRGRRPGKGPAEKISAE 227
Query: 553 DLDADLEKYHAESMPLN 503
DLDADL+KYH+ M N
Sbjct: 228 DLDADLDKYHSGDMETN 244
>gb|AAM63758.1| transcriptional coactivator-like protein [Arabidopsis thaliana]
Length = 243
Score = 301 bits (772), Expect = 1e-80
Identities = 165/257 (64%), Positives = 190/257 (73%), Gaps = 3/257 (1%)
Frame = -3
Query: 1264 MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRI-PNRASNRAAPYAAPKAPE 1088
MS LDM+LDD+I KN+KS R GSGPGP RR PNR S R+APY + KAPE
Sbjct: 1 MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60
Query: 1087 TAWGHDMYADEPVQVAAFPGHGGGRASS-IETGTKLYISNLDYGVSSDDIKELFSEVGDL 911
+ WGHDM++D H GR+S+ IETGTKLYIS LDYGV ++DIKELF+EVG+L
Sbjct: 61 STWGHDMFSDRSED------HRSGRSSAGIETGTKLYISXLDYGVMNEDIKELFAEVGEL 114
Query: 910 KRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAP 731
KR+TVH+DRSGRSKGTAEVV+SRRGDA AAVK+YN+VQLDGKPMKIEIVGTN+ T A AP
Sbjct: 115 KRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAP 173
Query: 730 AANGAFGNSNGVP-RSGQGRGGAFGRLRGGGDGGRGRGHRRGRGRGRGHGRGRGEKVSAE 554
+ A GNSNG P R GQGRGG RGGG GG GRG G GRGR G+G EK+SAE
Sbjct: 174 SGRPANGNSNGAPWRGGQGRGGQ----RGGGRGGGGRG---GGGRGRRPGKGPAEKISAE 226
Query: 553 DLDADLEKYHAESMPLN 503
DLDADL+KYH+ M N
Sbjct: 227 DLDADLDKYHSGDMETN 243
>dbj|BAB08363.1| RNA and export factor binding protein 2-I-like protein [Arabidopsis
thaliana]
Length = 239
Score = 299 bits (765), Expect = 8e-80
Identities = 164/256 (64%), Positives = 190/256 (74%), Gaps = 2/256 (0%)
Frame = -3
Query: 1264 MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRI-PNRASNRAAPYAAPKAPE 1088
MS LDM+LDD+I KN+KS R GSGPGP RR PNR S R+APY + KAPE
Sbjct: 1 MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60
Query: 1087 TAWGHDMYADEPVQVAAFPGHGGGRASS-IETGTKLYISNLDYGVSSDDIKELFSEVGDL 911
+ WGHDM++D H GR+S+ IETGTKLYISNLDYGV ++DIKELF+EVG+L
Sbjct: 61 STWGHDMFSDRSED------HRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGEL 114
Query: 910 KRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAP 731
KR+TVH+DRSGRSKGTAEVV+SRRGDA AAVK+YN+VQLDGKPMKIEIVGTN+ T A AP
Sbjct: 115 KRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAP 173
Query: 730 AANGAFGNSNGVPRSGQGRGGAFGRLRGGGDGGRGRGHRRGRGRGRGHGRGRGEKVSAED 551
+ A GNSNG GQGRG G+ RGGG GG GRG G GRGR G+G EK+SAED
Sbjct: 174 SGRPANGNSNG----GQGRG---GQQRGGGRGGGGRG---GGGRGRRPGKGPAEKISAED 223
Query: 550 LDADLEKYHAESMPLN 503
LDADL+KYH+ M N
Sbjct: 224 LDADLDKYHSGDMETN 239
>gb|AAM98152.1| putative protein [Arabidopsis thaliana]
Length = 292
Score = 275 bits (703), Expect = 1e-72
Identities = 169/293 (57%), Positives = 190/293 (64%), Gaps = 42/293 (14%)
Frame = -3
Query: 1264 MSAALDMTLDDIIKKNKKSAPSNPRGR---------NRAPGSGPGPARRIPNRASNRAAP 1112
MS LDM+LDDIIK N+K S RG GS GP+RR NR R AP
Sbjct: 1 MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60
Query: 1111 YAAP----KAPETAWGHDMYADEPVQVAAFPGH-----GGGRASSIETGTKLYISNLDYG 959
Y+ P +A + W +D++A + AAF H GGG SSIETGTKLYISNLDYG
Sbjct: 61 YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGG--SSIETGTKLYISNLDYG 118
Query: 958 VSSDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPM 779
VS++DIKELFSEVGDLKR+ +HYDRSGRSKGTAEVVFSRRGDA AAVKRYNNVQLDGK M
Sbjct: 119 VSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLM 178
Query: 778 KIEIVGTNITTPAVAPAA-------------------NGAF-GNSNGVPRSGQGRGGAFG 659
KIEIVGTN++ PA+ A NG F GN NG R G+GRGG G
Sbjct: 179 KIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFR-GRGRGGFMG 237
Query: 658 RLRGGGDGG----RGRGHRRGRGRGRGHGRGRGEKVSAEDLDADLEKYHAESM 512
R RGGG GG GRG R GRG G GRGR E VSAEDLDA+L+KYH E+M
Sbjct: 238 RPRGGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAM 289
>ref|NP_195873.1| RNA and export factor binding protein, putative; protein id:
At5g02530.1 [Arabidopsis thaliana]
gi|11358209|pir||T48274 hypothetical protein T22P11.120 -
Arabidopsis thaliana gi|7413642|emb|CAB85990.1| putative
protein [Arabidopsis thaliana]
Length = 290
Score = 272 bits (696), Expect = 8e-72
Identities = 165/290 (56%), Positives = 187/290 (63%), Gaps = 39/290 (13%)
Frame = -3
Query: 1264 MSAALDMTLDDIIKKNKKSAPSNPRGR---------NRAPGSGPGPARRIPNRASNRAAP 1112
MS LDM+LDDIIK N+K S RG GS GP+RR NR R AP
Sbjct: 1 MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60
Query: 1111 YAAP----KAPETAWGHDMYADEPVQVAAFPGH-----GGGRASSIETGTKLYISNLDYG 959
Y+ P +A + W +D++A + AAF H GGG SSIETGTKLYISNLDYG
Sbjct: 61 YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGG--SSIETGTKLYISNLDYG 118
Query: 958 VSSDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPM 779
VS++DIKELFSEVGDLKR+ +HYDRSGRSKGTAEVVFSRRGDA AAVKRYNNVQLDGK M
Sbjct: 119 VSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLM 178
Query: 778 KIEIVGTNITTPAVAPAA--------NGAFGNSN---------GVPRSGQGRGGAFGRLR 650
KIEIVGTN++ PA+ A NG GN N + +GRGG GR R
Sbjct: 179 KIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPR 238
Query: 649 GGGDGG----RGRGHRRGRGRGRGHGRGRGEKVSAEDLDADLEKYHAESM 512
GGG GG GRG R GRG G GRGR E VSAEDLDA+L+KYH E+M
Sbjct: 239 GGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAM 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,354,788,461
Number of Sequences: 1393205
Number of extensions: 36837095
Number of successful extensions: 432283
Number of sequences better than 10.0: 4866
Number of HSP's better than 10.0 without gapping: 155320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325791
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 88591221112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
