Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003158A_C01 KMC003158A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01901 transcription regulator SPO8 homolog T12H20.6 - Arab... 50 2e-05
ref|NP_192814.1| putative methyltransferase; protein id: At4g107... 50 2e-05
gb|AAN85523.1|AF484556_45 polyketide synthase [Streptomyces atro... 40 0.013
ref|NP_047080.1| L5701.7 [Leishmania major] gi|7494067|pir||T028... 39 0.048
dbj|BAC04577.1| unnamed protein product [Homo sapiens] 37 0.11
>pir||T01901 transcription regulator SPO8 homolog T12H20.6 - Arabidopsis
thaliana gi|3600038|gb|AAC35526.1| similar to
Saccharomyces cerevisiae transcription regulator SPO8
(SW:P41833) [Arabidopsis thaliana]
Length = 747
Score = 49.7 bits (117), Expect = 2e-05
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -2
Query: 524 RARFKAAYPDLEVQPSSPPRASAMEVDS 441
RARFKA+YP+++VQP SPPRASAME D+
Sbjct: 710 RARFKASYPEIDVQPPSPPRASAMETDN 737
>ref|NP_192814.1| putative methyltransferase; protein id: At4g10760.1 [Arabidopsis
thaliana] gi|25371567|pir||E85112 probable
methyltransferase [imported] - Arabidopsis thaliana
gi|7267774|emb|CAB81177.1| putative methyltransferase
[Arabidopsis thaliana]
Length = 685
Score = 49.7 bits (117), Expect = 2e-05
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -2
Query: 524 RARFKAAYPDLEVQPSSPPRASAMEVDS 441
RARFKA+YP+++VQP SPPRASAME D+
Sbjct: 648 RARFKASYPEIDVQPPSPPRASAMETDN 675
>gb|AAN85523.1|AF484556_45 polyketide synthase [Streptomyces atroolivaceus]
Length = 7349
Score = 40.4 bits (93), Expect = 0.013
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 491 EVQPSSP-PRASAMEVDSSVPAPTRSPFAVTEPKSTAAQSPEPAAPATSIASEEKSMAID 315
+ QPS+P P +++V + +PAP +P +V PEPAA + A ++ + +D
Sbjct: 3739 QAQPSAPVPAPVSVDVPAPIPAPIPAPVSVPVDVQEPESEPEPAAAVRTPAGDDPADPLD 3798
Query: 314 VVDIG*VCTY 285
+ IG V Y
Sbjct: 3799 IAVIGVVGRY 3808
>ref|NP_047080.1| L5701.7 [Leishmania major] gi|7494067|pir||T02842 probable membrane
protein L5701.7 [imported] - Leishmania major (strain
Friedlin) gi|1617565|gb|AAC24665.1| L5701.7 [Leishmania
major]
Length = 969
Score = 38.5 bits (88), Expect = 0.048
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -2
Query: 479 SSPPRASAMEVDSSVPAPTRSPFAVTEPKSTAAQSPEPAAPATSIASEEKSMA 321
+S PR +A+ S PAP+ +P AV P T PA PAT+IA+ +K A
Sbjct: 4 ASKPRGAALSFSFSSPAPSAAPTAVAVPART------PAEPATAIAAADKDGA 50
>dbj|BAC04577.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 37.4 bits (85), Expect = 0.11
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 482 PSSPPRASAMEVDSSVPAPTRSPFAVTEPKSTAAQSPEPAAPATSIASEE 333
P + P +SVPAPT +P A P + A S +PAAP + AS +
Sbjct: 11 PPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAPGQTPASAQ 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,422,105
Number of Sequences: 1393205
Number of extensions: 9544052
Number of successful extensions: 48730
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 38097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46994
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
