Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003156A_C01 KMC003156A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_059675.1| iaaH [Agrobacterium tumefaciens] gi|123931|sp|P... 156 4e-41
ref|NP_396527.1| AGR_pTi_48p [Agrobacterium tumefaciens] gi|1793... 137 4e-32
ref|NP_053422.1| Probable tms2 gene [Agrobacterium tumefaciens] ... 137 4e-32
gb|AAD30488.1|AF126446_3 indole-3-acetamide hydrolase [Agrobacte... 137 4e-32
dbj|BAA76345.1| indole acetamide hydrolase [Agrobacterium tumefa... 136 1e-31
>ref|NP_059675.1| iaaH [Agrobacterium tumefaciens] gi|123931|sp|P03868|HYIN_AGRTU
Indoleacetamide hydrolase (IAH) (Indole-3-acetamide
hydrolase) gi|67988|pir||Q2AGAT indoleacetamide
hydrolase (EC 3.5.1.-) - Agrobacterium tumefaciens
plasmids gi|39066|emb|CAA25166.1| open reading frame 4
gene tms [Agrobacterium tumefaciens]
gi|39177|emb|CAA25116.1| tms (transcript 2)
[Agrobacterium tumefaciens] gi|455373|gb|AAA92549.1|
tms2 gene product gi|8572676|gb|AAF77122.1| iaaH
[Agrobacterium tumefaciens]
Length = 467
Score = 156 bits (395), Expect(2) = 4e-41
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = -1
Query: 457 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSHAGLPGLSIPVCLTPDRLPV 278
ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSS+AGLPGLSIPVCLTPDRLPV
Sbjct: 373 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSNAGLPGLSIPVCLTPDRLPV 432
Query: 277 GMEIDGLADSDQRLLAIRGGI 215
GMEIDGLADSDQRLLAI G +
Sbjct: 433 GMEIDGLADSDQRLLAIGGAL 453
Score = 32.3 bits (72), Expect(2) = 4e-41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -2
Query: 225 GGALEEAIGFRYFA 184
GGALEEAIGFRYFA
Sbjct: 450 GGALEEAIGFRYFA 463
>ref|NP_396527.1| AGR_pTi_48p [Agrobacterium tumefaciens]
gi|17939143|ref|NP_536128.1| indole acetamide hydrolase
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gi|25290865|pir||AH3228 indole acetamide hydrolase
[imported] - Agrobacterium tumefaciens (strain C58,
Dupont) plasmid Ti gi|5042194|emb|CAB44639.1| IAH
[Agrobacterium tumefaciens] gi|15163472|gb|AAK90968.1|
AGR_pTi_48p [Agrobacterium tumefaciens str. C58
(Cereon)] gi|17744024|gb|AAL46246.1| indole acetamide
hydrolase [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 467
Score = 137 bits (346), Expect = 4e-32
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = -1
Query: 457 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSHAGLPGLSIPVCLTPDRLPV 278
ILFPTAPL A+ IGQ+SSVIHNG+M++TFKIYVRNVDPSS+AGLPGLS+P CLTPDRLPV
Sbjct: 373 ILFPTAPLAAKAIGQESSVIHNGSMMNTFKIYVRNVDPSSNAGLPGLSLPACLTPDRLPV 432
Query: 277 GMEIDGLADSDQRLLAIRGGIGRSHWIPIF 188
GMEIDGLA SD RLLAI + ++ P F
Sbjct: 433 GMEIDGLAGSDHRLLAIGAALEKAINFPSF 462
>ref|NP_053422.1| Probable tms2 gene [Agrobacterium tumefaciens]
gi|6498355|dbj|BAA87807.1| Probable tms2 gene
[Agrobacterium tumefaciens]
Length = 467
Score = 137 bits (346), Expect = 4e-32
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = -1
Query: 457 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSHAGLPGLSIPVCLTPDRLPV 278
ILFPTAPL A+ IGQ+SSVIHNG+M++TFKIYVRNVDPSS+AGLPGLS+P CLTPDRLPV
Sbjct: 373 ILFPTAPLAAKAIGQESSVIHNGSMINTFKIYVRNVDPSSNAGLPGLSLPACLTPDRLPV 432
Query: 277 GMEIDGLADSDQRLLAIRGGIGRSHWIPIF 188
GMEIDGLA SD RLLAI + ++ P F
Sbjct: 433 GMEIDGLAGSDHRLLAIGAALEKAINFPSF 462
>gb|AAD30488.1|AF126446_3 indole-3-acetamide hydrolase [Agrobacterium tumefaciens]
Length = 466
Score = 137 bits (346), Expect = 4e-32
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = -1
Query: 457 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSHAGLPGLSIPVCLTPDRLPV 278
ILFPTAPL A+ IGQ+SSVIHNG+M++TFKIYVRNVDPSS+AGLPGLS+P CLTPDRLPV
Sbjct: 372 ILFPTAPLAAKAIGQESSVIHNGSMMNTFKIYVRNVDPSSNAGLPGLSLPACLTPDRLPV 431
Query: 277 GMEIDGLADSDQRLLAIRGGIGRSHWIPIF 188
GMEIDGLA SD RLLAI + ++ P F
Sbjct: 432 GMEIDGLAGSDHRLLAIGAALEKAINFPSF 461
>dbj|BAA76345.1| indole acetamide hydrolase [Agrobacterium tumefaciens]
Length = 467
Score = 136 bits (342), Expect = 1e-31
Identities = 65/84 (77%), Positives = 75/84 (88%)
Frame = -1
Query: 457 ILFPTAPLVARPIGQDSSVIHNGTMLDTFKIYVRNVDPSSHAGLPGLSIPVCLTPDRLPV 278
ILFPTAPL A+ IGQ+SSVIHNG+M++TFKIYVRNVDPSS+AGLPGLS+P CLTPDRLPV
Sbjct: 373 ILFPTAPLAAKAIGQESSVIHNGSMMNTFKIYVRNVDPSSNAGLPGLSLPACLTPDRLPV 432
Query: 277 GMEIDGLADSDQRLLAIRGGIGRS 206
GMEIDGLA SD RLLAI + ++
Sbjct: 433 GMEIDGLAGSDHRLLAIGAALEKA 456
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,705,645
Number of Sequences: 1393205
Number of extensions: 9955241
Number of successful extensions: 32693
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 31736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32679
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
