Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003155A_C01 KMC003155A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201214.1| unknown protein; protein id: At5g64090.1 [Arabi... 140 2e-32
ref|NP_197604.1| putative protein; protein id: At5g21050.1 [Arab... 75 6e-13
ref|XP_217927.1| similar to putative protein kinase [Mus musculu... 35 0.74
ref|NP_744376.1| multicomponent potassium-proton antiporter, sub... 35 1.3
pir||S44382 PML protein, splice form 3 - human gi|190121|gb|AAA6... 34 2.1
>ref|NP_201214.1| unknown protein; protein id: At5g64090.1 [Arabidopsis thaliana]
gi|10176957|dbj|BAB10277.1| gene_id:MHJ24.7~unknown
protein [Arabidopsis thaliana]
Length = 448
Score = 140 bits (352), Expect = 2e-32
Identities = 72/106 (67%), Positives = 81/106 (75%), Gaps = 5/106 (4%)
Frame = -1
Query: 613 GLAKGDRIPLPWEILQPALRILGHCLFAPLNPQEVKDAASFAVRCLYARASHDLVPQAIL 434
G+ +G RIPLPWE+ QP LRILGHCL +PLN ++VKDAAS AVR LYARASHDL PQAIL
Sbjct: 343 GVGRGVRIPLPWELFQPTLRILGHCLLSPLNTEDVKDAASNAVRSLYARASHDLNPQAIL 402
Query: 433 ATRSLIQLDNRARDAAKVAAAAT-----NPNTPTKVKKPEILLVSK 311
ATRSL+ LD AR + K AA T N NTP+K KKPEILL SK
Sbjct: 403 ATRSLVNLDTSARTSGKTVAAETVNGSSNVNTPSKAKKPEILLASK 448
>ref|NP_197604.1| putative protein; protein id: At5g21050.1 [Arabidopsis thaliana]
Length = 355
Score = 75.5 bits (184), Expect = 6e-13
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = -1
Query: 595 RIPLPWEILQPALRILGHCLFA-PLNPQEVKDAASFAVRCLYARASHDLVPQAILATRSL 419
RIPLPWE+LQP LRILGHCL + +E+ +AA+ A + LY R+ HD+ P+AILAT SL
Sbjct: 269 RIPLPWELLQPILRILGHCLLGLKMEDRELSEAANKACQSLYLRSLHDINPKAILATGSL 328
Query: 418 IQLDNRARD 392
++L A D
Sbjct: 329 LRLREMALD 337
>ref|XP_217927.1| similar to putative protein kinase [Mus musculus] [Rattus
norvegicus]
Length = 866
Score = 35.4 bits (80), Expect = 0.74
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 101 ELSCALVVPLVYCNACGCAISVWCE 27
E CAL V +C CGCA++VWCE
Sbjct: 842 ECCCALTV---WCEECGCALTVWCE 863
Score = 32.0 bits (71), Expect = 8.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 101 ELSCALVVPLVYCNACGCAISVWCE 27
E CAL V +C C CA++VWCE
Sbjct: 831 ECCCALTV---WCEECCCALTVWCE 852
>ref|NP_744376.1| multicomponent potassium-proton antiporter, subunit E, putative
[Pseudomonas putida KT2440]
gi|24983766|gb|AAN67840.1|AE016415_5 multicomponent
potassium-proton antiporter, subunit E, putative
[Pseudomonas putida KT2440]
Length = 162
Score = 34.7 bits (78), Expect = 1.3
Identities = 29/117 (24%), Positives = 47/117 (39%), Gaps = 7/117 (5%)
Frame = -1
Query: 574 ILQPALRILGHCLFAPLNPQEVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDNRAR 395
+L AL IL L APL PQ A+ L R D++ +L R +++ D +
Sbjct: 31 LLGAALGILAPLLMAPLRPQHAHVRRPLAIARLICRVGIDVITSNLLVARGVLRADKQPP 90
Query: 394 DAAKVAAAATNPNTPTKVKKPEILLVSK*VLAAVLYSLW-------VAAVQHHFQLD 245
+A V + P ++ P L + V ++W + H F+LD
Sbjct: 91 RSAFV-------HIPLALRDPHGLAALSMITTVVPGTVWSELALDRSVLLLHVFELD 140
>pir||S44382 PML protein, splice form 3 - human gi|190121|gb|AAA60390.1|
putative
Length = 802
Score = 33.9 bits (76), Expect = 2.1
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 9/62 (14%)
Frame = +1
Query: 517 EGSMGQTNSAPRSSTPVAESPKAKGSY---------PLWPTHQNHESAPSPSFLQHSQSQ 669
E +S+P S+PV +A+G+ P WP HQ E A +P HS+
Sbjct: 557 EPQSSPAHSSPAHSSPVQSLLRAQGASSLPCGTYHPPAWPPHQPAEQAATPDAEPHSEPP 616
Query: 670 SH 675
H
Sbjct: 617 DH 618
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,686,510
Number of Sequences: 1393205
Number of extensions: 13496033
Number of successful extensions: 44210
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 41335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44145
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
