Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003154A_C01 KMC003154A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arieti... 149 3e-35
gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula] 145 6e-34
gb|AAM18134.1|AF498358_1 small G-protein ROP6 [Medicago truncatula] 135 6e-31
gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum] 134 1e-30
sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780... 134 1e-30
>dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]
Length = 197
Score = 149 bits (377), Expect = 3e-35
Identities = 74/76 (97%), Positives = 74/76 (97%)
Frame = -1
Query: 663 LRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 484
LRDDKQFFQDHP AVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP
Sbjct: 122 LRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 181
Query: 483 KQKKTKRKGPKACSIL 436
KQKKTKRKG KACSIL
Sbjct: 182 KQKKTKRKGQKACSIL 197
>gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula]
Length = 197
Score = 145 bits (365), Expect = 6e-34
Identities = 71/76 (93%), Positives = 72/76 (94%)
Frame = -1
Query: 663 LRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 484
LRDD QFFQDHP A PITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFD+AIKVVLQPP
Sbjct: 122 LRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQPP 181
Query: 483 KQKKTKRKGPKACSIL 436
KQKKTKRKG KACSIL
Sbjct: 182 KQKKTKRKGQKACSIL 197
>gb|AAM18134.1|AF498358_1 small G-protein ROP6 [Medicago truncatula]
Length = 197
Score = 135 bits (339), Expect = 6e-31
Identities = 66/76 (86%), Positives = 69/76 (89%)
Frame = -1
Query: 663 LRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 484
LRDDKQFF DHP AVPITTAQGEELRKLI AP YIECSSK+Q+NVKAVFDAAI+VVLQPP
Sbjct: 122 LRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPP 181
Query: 483 KQKKTKRKGPKACSIL 436
KQKK K K PKACSIL
Sbjct: 182 KQKKKKSKAPKACSIL 197
>gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum]
Length = 197
Score = 134 bits (337), Expect = 1e-30
Identities = 67/76 (88%), Positives = 68/76 (89%)
Frame = -1
Query: 663 LRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 484
LRDDKQFF DHP AVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIKVVLQPP
Sbjct: 122 LRDDKQFFIDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
Query: 483 KQKKTKRKGPKACSIL 436
KQKK K K KACSIL
Sbjct: 182 KQKKKKGKAQKACSIL 197
>sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780|emb|CAA89050.1| small G
protein [Beta vulgaris]
Length = 197
Score = 134 bits (337), Expect = 1e-30
Identities = 67/76 (88%), Positives = 68/76 (89%)
Frame = -1
Query: 663 LRDDKQFFQDHPAAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQPP 484
LRDDKQFF DHP AVPITTAQGEELRKLIGAP YIECSSKTQ+NVKAVFDAAIKVVLQPP
Sbjct: 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181
Query: 483 KQKKTKRKGPKACSIL 436
K KK K K KACSIL
Sbjct: 182 KTKKKKSKAQKACSIL 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,926,180
Number of Sequences: 1393205
Number of extensions: 11302218
Number of successful extensions: 25576
Number of sequences better than 10.0: 373
Number of HSP's better than 10.0 without gapping: 24939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25555
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
