Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003153A_C01 KMC003153A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176321.1| cotton fiber expressed protein, putative; prote... 65 9e-10
dbj|BAC20874.1| putative fiber protein [Oryza sativa (japonica c... 57 1e-07
pir||T09820 fiber protein 1 [imported] - upland cotton gi|326482... 56 4e-07
ref|NP_200241.1| cotton fiber expressed protein 1-like protein; ... 55 1e-06
ref|NP_567280.1| contains similarity to Gossypium hirsutum cott... 45 0.001
>ref|NP_176321.1| cotton fiber expressed protein, putative; protein id: At1g61260.1
[Arabidopsis thaliana] gi|25373438|pir||F96638
hypothetical protein F11P17.2 [imported] - Arabidopsis
thaliana gi|2443876|gb|AAB71469.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 339
Score = 64.7 bits (156), Expect = 9e-10
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 9/64 (14%)
Frame = -3
Query: 593 KSDTFNDR---------ASLRREKSMSPEELALRSEAFIKNFNYQMKLQRLESYQRFKEM 441
KSDTF DR A +R+E S+S EEL R EAFIK FN +MKLQR+ES +++KE+
Sbjct: 275 KSDTFRDRTNYYQLAETAKVRKEPSLSQEELNRRVEAFIKKFNEEMKLQRMESLRQYKEI 334
Query: 440 VSRG 429
SRG
Sbjct: 335 TSRG 338
>dbj|BAC20874.1| putative fiber protein [Oryza sativa (japonica cultivar-group)]
Length = 333
Score = 57.4 bits (137), Expect = 1e-07
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Frame = -3
Query: 599 LTKSDTFNDRAS-------LRREKSMSPEELALRSEAFIKNFNYQMKLQRLESYQRFKEM 441
+ K++TFN+ A +RRE S+ +EL R EAFI FN +M+LQR ES + + EM
Sbjct: 267 MRKAETFNEAAGGGGGGKKVRREPSLGQDELNRRVEAFINKFNMEMRLQRQESLKHYNEM 326
Query: 440 VSRGRV 423
+SRG V
Sbjct: 327 ISRGSV 332
>pir||T09820 fiber protein 1 [imported] - upland cotton
gi|3264828|gb|AAC33276.1| cotton fiber expressed protein
1 [Gossypium hirsutum]
Length = 331
Score = 55.8 bits (133), Expect = 4e-07
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 16/73 (21%)
Frame = -3
Query: 599 LTKSDTFNDRAS----------------LRREKSMSPEELALRSEAFIKNFNYQMKLQRL 468
+ KS+TF DR + LR+E S+S +EL R EAFIK FN +M+LQR
Sbjct: 258 MKKSETFRDRTNYQLPPEQVSSFPASGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQ 317
Query: 467 ESYQRFKEMVSRG 429
ES ++ EMV+RG
Sbjct: 318 ESLNQYMEMVNRG 330
>ref|NP_200241.1| cotton fiber expressed protein 1-like protein; protein id:
At5g54300.1, supported by cDNA: gi_20466705 [Arabidopsis
thaliana] gi|9759503|dbj|BAB10753.1| cotton fiber
expressed protein 1-like protein [Arabidopsis thaliana]
gi|20466706|gb|AAM20670.1| cotton fiber expressed
protein 1-like protein [Arabidopsis thaliana]
gi|23198238|gb|AAN15646.1| cotton fiber expressed
protein 1-like protein [Arabidopsis thaliana]
Length = 326
Score = 54.7 bits (130), Expect = 1e-06
Identities = 30/67 (44%), Positives = 42/67 (61%), Gaps = 7/67 (10%)
Frame = -3
Query: 608 QKELTKSDTFND-------RASLRREKSMSPEELALRSEAFIKNFNYQMKLQRLESYQRF 450
++++TKS+ D + L+RE S EEL R EAFIK FN +M+LQRLES ++
Sbjct: 257 KEKMTKSENLKDINTPTEEKTVLKREPSPGQEELNRRVEAFIKKFNEEMRLQRLESLAKY 316
Query: 449 KEMVSRG 429
EMV+ G
Sbjct: 317 NEMVNGG 323
>ref|NP_567280.1| contains similarity to Gossypium hirsutum cotton fiber expressed
protein 1 (GB:AF072404); protein id: At4g04990.1
[Arabidopsis thaliana] gi|25407309|pir||G85062
hypothetical protein AT4g04990 [imported] - Arabidopsis
thaliana gi|5732070|gb|AAD48969.1|AF162444_1 contains
similarity to Gossypium hirsutum cotton fiber expressed
protein 1 (GB:AF072404) [Arabidopsis thaliana]
gi|7267258|emb|CAB81041.1| contains similarity to
Gossypium hirsutum cotton fiber expressed protein 1
(GB:AF072404)~similarity to~contains EST gb:AI996422.1
[Arabidopsis thaliana]
Length = 303
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/39 (58%), Positives = 28/39 (70%)
Frame = -3
Query: 563 LRREKSMSPEELALRSEAFIKNFNYQMKLQRLESYQRFK 447
L++E SM EEL R EAFI F +MKLQRLES +R+K
Sbjct: 256 LKKELSMGREELNSRVEAFITKFKDEMKLQRLESVRRYK 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,337,831
Number of Sequences: 1393205
Number of extensions: 9819734
Number of successful extensions: 20749
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20749
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
