Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003151A_C01 KMC003151A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL15314.1| AT4g36900/C7A10_460 [Arabidopsis thaliana] 47 1e-04
ref|NP_195408.1| AP2 domain protein RAP2.10; protein id: At4g369... 47 1e-04
pir||T52619 TINY-like protein [imported] - Arabidopsis thaliana ... 47 1e-04
ref|NP_179915.1| putative AP2 domain transcription factor; prote... 45 5e-04
ref|NP_190595.1| putative protein; protein id: At3g50260.1, supp... 45 7e-04
>gb|AAL15314.1| AT4g36900/C7A10_460 [Arabidopsis thaliana]
Length = 196
Score = 47.4 bits (111), Expect = 1e-04
Identities = 31/84 (36%), Positives = 42/84 (49%), Gaps = 17/84 (20%)
Frame = -1
Query: 590 FIRKKATEVGARVDALQSATLPLPHHNHHPRAA-----------------PVPELLIGGG 462
+IR+KA EVGA+VDAL++A H+HH + + E G
Sbjct: 112 YIRRKAAEVGAQVDALEAAGAGGNRHHHHHQHQRGNHDYVDNHSDYRINDDLMECSSKEG 171
Query: 461 GGGSGDFAERVDLNKLPEPESSDE 390
ERVDLNKLP+PE+SD+
Sbjct: 172 FKRCNGSLERVDLNKLPDPETSDD 195
>ref|NP_195408.1| AP2 domain protein RAP2.10; protein id: At4g36900.1 [Arabidopsis
thaliana] gi|25407774|pir||G85435 TINY-like protein
[imported] - Arabidopsis thaliana
gi|2464890|emb|CAB16766.1| TINY-like protein
[Arabidopsis thaliana] gi|7270639|emb|CAB80356.1|
TINY-like protein [Arabidopsis thaliana]
Length = 196
Score = 47.4 bits (111), Expect = 1e-04
Identities = 31/84 (36%), Positives = 42/84 (49%), Gaps = 17/84 (20%)
Frame = -1
Query: 590 FIRKKATEVGARVDALQSATLPLPHHNHHPRAA-----------------PVPELLIGGG 462
+IR+KA EVGA+VDAL++A H+HH + + E G
Sbjct: 112 YIRRKAAEVGAQVDALEAAGAGGNRHHHHHQHQRGNHDYVDNHSDYRINDDLMECSSKEG 171
Query: 461 GGGSGDFAERVDLNKLPEPESSDE 390
ERVDLNKLP+PE+SD+
Sbjct: 172 FKRCNGSLERVDLNKLPDPETSDD 195
>pir||T52619 TINY-like protein [imported] - Arabidopsis thaliana (fragment)
gi|2281645|gb|AAC49776.1| AP2 domain containing protein
RAP2.10 [Arabidopsis thaliana]
gi|2632063|emb|CAA05630.1| TINY-like protein
[Arabidopsis thaliana]
Length = 259
Score = 47.4 bits (111), Expect = 1e-04
Identities = 31/84 (36%), Positives = 42/84 (49%), Gaps = 17/84 (20%)
Frame = -1
Query: 590 FIRKKATEVGARVDALQSATLPLPHHNHHPRAA-----------------PVPELLIGGG 462
+IR+KA EVGA+VDAL++A H+HH + + E G
Sbjct: 175 YIRRKAAEVGAQVDALEAAGAGGNRHHHHHQHQRGNHDYVDNHSDYRINDDLMECSSKEG 234
Query: 461 GGGSGDFAERVDLNKLPEPESSDE 390
ERVDLNKLP+PE+SD+
Sbjct: 235 FKRCNGSLERVDLNKLPDPETSDD 258
>ref|NP_179915.1| putative AP2 domain transcription factor; protein id: At2g23340.1
[Arabidopsis thaliana] gi|7487249|pir||T00498 probable
AP2 domain transcription factor At2g23340 [imported] -
Arabidopsis thaliana gi|2642430|gb|AAB87098.1| putative
AP2 domain transcription factor [Arabidopsis thaliana]
gi|26452018|dbj|BAC43099.1| putative AP2 domain
transcription factor [Arabidopsis thaliana]
gi|28372974|gb|AAO39969.1| At2g23340 [Arabidopsis
thaliana]
Length = 176
Score = 45.4 bits (106), Expect = 5e-04
Identities = 27/66 (40%), Positives = 36/66 (53%)
Frame = -1
Query: 590 FIRKKATEVGARVDALQSATLPLPHHNHHPRAAPVPELLIGGGGGGSGDFAERVDLNKLP 411
+IR+KA EVGA+VDAL + + + + G G ERVDLNKLP
Sbjct: 106 YIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGS-----LERVDLNKLP 160
Query: 410 EPESSD 393
+PE+SD
Sbjct: 161 DPENSD 166
>ref|NP_190595.1| putative protein; protein id: At3g50260.1, supported by cDNA:
gi_15010555, supported by cDNA: gi_20147396 [Arabidopsis
thaliana] gi|11357341|pir||T45572 hypothetical protein
F11C1.100 - Arabidopsis thaliana
gi|6523037|emb|CAB62305.1| putative protein [Arabidopsis
thaliana] gi|15010556|gb|AAK73937.1| AT3g50260/F11C1_100
[Arabidopsis thaliana] gi|20147397|gb|AAM10408.1|
AT3g50260/F11C1_100 [Arabidopsis thaliana]
Length = 153
Score = 45.1 bits (105), Expect = 7e-04
Identities = 29/66 (43%), Positives = 38/66 (56%)
Frame = -1
Query: 587 IRKKATEVGARVDALQSATLPLPHHNHHPRAAPVPELLIGGGGGGSGDFAERVDLNKLPE 408
IRKKATEVGA+VDA+ + + N+ R + GGG E VDLNKLP+
Sbjct: 93 IRKKATEVGAQVDAIGATVV----QNNKRRRVFSQKRDFGGG------LLELVDLNKLPD 142
Query: 407 PESSDE 390
PE+ D+
Sbjct: 143 PENLDD 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,033,614
Number of Sequences: 1393205
Number of extensions: 13510561
Number of successful extensions: 137981
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 74363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122688
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
