Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003149A_C01 KMC003149A_c01
(356 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174684.1| hypothetical protein; protein id: At1g34220.1 [... 30 5.9
ref|XP_286567.1| hypothetical protein XP_286567 [Mus musculus] 30 7.7
gb|EAA39154.1| GLP_302_44328_45269 [Giardia lamblia ATCC 50803] 30 7.7
>ref|NP_174684.1| hypothetical protein; protein id: At1g34220.1 [Arabidopsis
thaliana] gi|25403418|pir||E86466 protein F23M19.10
[imported] - Arabidopsis thaliana
gi|5091622|gb|AAD39610.1|AC007454_9 F23M19.10
[Arabidopsis thaliana]
Length = 619
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 349 RKKVEALATRYPIPGV*LHLLREC*KLRHLNFFDASTEVD 230
RK VE L+ R P P L LL+E + L++ ASTE D
Sbjct: 152 RKLVELLSVRAPSPETKLKLLKEIAEEHELDWDPASTETD 191
>ref|XP_286567.1| hypothetical protein XP_286567 [Mus musculus]
Length = 142
Score = 30.0 bits (66), Expect = 7.7
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Frame = -1
Query: 248 CKHRSGCRSSPA-QSLRHL*LL-----LMCLGVCLFCF----LLIISIVVL 126
CK S C SSP Q +H L CL VCLFCF LL +++ VL
Sbjct: 83 CKRVSFCISSPTLQPHQHCILTNTSHCTFCLFVCLFCFFETGLLCVALAVL 133
>gb|EAA39154.1| GLP_302_44328_45269 [Giardia lamblia ATCC 50803]
Length = 313
Score = 30.0 bits (66), Expect = 7.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 118 KWNRTTIDIISKKQNKHTPKHIRSNYKCRRLWAGED 225
KWN + +I K Q TP I +N+KC + +D
Sbjct: 252 KWNTSMYSVIPKSQ---TPARIEANFKCTEVQLSDD 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,554,433
Number of Sequences: 1393205
Number of extensions: 5840070
Number of successful extensions: 13992
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13980
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
